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BioLiP
Download all results in tab-seperated text for 87 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1fpb:A (2.6) BS01 FDP 3.1.3.11 GO:0005737 ... P00636 1312721
    2 1fpb:A (2.6) BS02 FDP 3.1.3.11 GO:0005737 ... P00636 1312721
    3 1fpb:B (2.6) BS01 FDP 3.1.3.11 GO:0005737 ... P00636 1312721
    4 1frp:A (2.0) BS01 FDP 3.1.3.11 GO:0005737 ... P00636 7809062
    5 1frp:B (2.0) BS01 FDP 3.1.3.11 GO:0005737 ... P00636 7809062
    6 2i1v:B (2.5) BS01 FDP 2.7.1.105
    3.1.3.46    		 GO:0003824 ... Q16875 17499765
    7 2qvr:A (2.18) BS01 FDP 3.1.3.11 GO:0000166 ... P0A993 17933867
    8 2qvu:A (1.5) BS01 FDP 3.1.3.11 GO:0005737 ... P00636 17933867 MOAD: Kd=0.36uM
    9 2qvu:B (1.5) BS01 FDP 3.1.3.11 GO:0005737 ... P00636 17933867 MOAD: Kd=0.36uM
    10 2qvv:A (2.03) BS01 FDP 3.1.3.11 GO:0005737 ... P00636 17933867
    11 2qvv:B (2.03) BS01 FDP 3.1.3.11 GO:0005737 ... P00636 17933867
    12 3fbp:A (2.8) BS01 FDP 3.1.3.11 GO:0005737 ... P00636 2157849
    13 3fbp:B (2.8) BS01 FDP 3.1.3.11 GO:0005737 ... P00636 2157849
    14 3hqp:A (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    15 3hqp:B (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    16 3hqp:C (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    17 3hqp:D (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    18 3hqp:E (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    19 3hqp:F (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    20 3hqp:G (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    21 3hqp:H (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    22 3hqp:I (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    23 3hqp:J (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    24 3hqp:K (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    25 3hqp:L (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    26 3hqp:M (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    27 3hqp:N (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    28 3hqp:O (2.3) BS01 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    29 3hqp:P (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    30 3hqq:A (5.07) BS01 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    31 3hqq:B (5.07) BS01 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    32 3hqq:C (5.07) BS01 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    33 3hqq:D (5.07) BS01 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    34 3hqq:E (5.07) BS01 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    35 3hqq:F (5.07) BS01 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    36 3hqq:G (5.07) BS01 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    37 3hqq:H (5.07) BS01 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    38 3hqq:I (5.07) BS01 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    39 3hqq:J (5.07) BS01 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    40 3hqq:K (5.07) BS01 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    41 3hqq:L (5.07) BS01 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    42 3hqq:M (5.07) BS01 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    43 3hqq:N (5.07) BS01 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    44 3hqq:O (5.07) BS01 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    45 3hqq:P (5.07) BS01 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    46 3hqq:Q (5.07) BS01 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    47 3hqq:R (5.07) BS01 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    48 3hqq:S (5.07) BS01 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    49 3hqq:T (5.07) BS01 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    50 3hqq:U (5.07) BS01 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    51 3hqq:V (5.07) BS01 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    52 3hqq:W (5.07) BS01 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    53 3hqq:X (5.07) BS01 FDP 2.7.1.40 GO:0000287 ... Q27686 20123988
    54 3o8o:A (2.9) BS02 FDP 2.7.1.11 GO:0003872 ... P16861 21241708
    55 3o8o:A (2.9) BS04 FDP 2.7.1.11 GO:0003872 ... P16861 21241708
    56 3o8o:B (2.9) BS03 FDP 2.7.1.11 GO:0003872 ... P16862 21241708
    57 3o8o:C (2.9) BS02 FDP 2.7.1.11 GO:0003872 ... P16861 21241708
    58 3o8o:D (2.9) BS03 FDP 2.7.1.11 GO:0003872 ... P16862 21241708
    59 3o8o:E (2.9) BS02 FDP 2.7.1.11 GO:0003872 ... P16861 21241708
    60 3o8o:F (2.9) BS03 FDP 2.7.1.11 GO:0003872 ... P16862 21241708
    61 3o8o:G (2.9) BS02 FDP 2.7.1.11 GO:0003872 ... P16861 21241708
    62 3o8o:H (2.9) BS03 FDP 2.7.1.11 GO:0003872 ... P16862 21241708
    63 3qpv:A (2.5) BS01 FDP 2.7.1.105
    3.1.3.46    		 GO:0003824 ... Q16875 22275052
    64 4gwu:A (3.0) BS01 FDP 3.1.3.11 GO:0005737 ... P00636 N/A
    65 4hyv:A (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... P30615 23999300
    66 4hyv:B (2.3) BS03 FDP 2.7.1.40 GO:0000287 ... P30615 23999300
    67 4hyw:A (2.35) BS02 FDP 2.7.1.40 GO:0000287 ... P30615 23999300
    68 4hyw:B (2.35) BS02 FDP 2.7.1.40 GO:0000287 ... P30615 23999300
    69 4kct:A (1.95) BS03 FDP 2.7.1.40 GO:0000287 ... P30615 24328825
    70 4kct:B (1.95) BS03 FDP 2.7.1.40 GO:0000287 ... P30615 24328825
    71 4kcu:A (2.35) BS03 FDP 2.7.1.40 GO:0000287 ... P30615 24328825
    72 4kcu:B (2.35) BS03 FDP 2.7.1.40 GO:0000287 ... P30615 24328825
    73 4kcv:A (2.18) BS03 FDP 2.7.1.40 GO:0000287 ... P30615 24328825
    74 4kcv:B (2.18) BS03 FDP 2.7.1.40 GO:0000287 ... P30615 24328825
    75 4kcw:A (2.5) BS03 FDP 2.7.1.40 GO:0000287 ... P30615 24328825
    76 4kcw:B (2.5) BS03 FDP 2.7.1.40 GO:0000287 ... P30615 24328825
    77 4ks0:A (2.8) BS03 FDP 2.7.1.40 GO:0000287 ... Q4D9Z4 26064527
    78 4ks0:B (2.8) BS03 FDP 2.7.1.40 GO:0000287 ... Q4D9Z4 26064527
    79 5ajv:B (3.01) BS02 FDP 2.7.1.105
    3.1.3.46    		 GO:0003824 ... Q16875 25849762
    80 5q0c:A (2.4) BS02 FDP 3.1.3.11 GO:0005515 ... O00757 N/A
    81 5q0c:B (2.4) BS02 FDP 3.1.3.11 GO:0005515 ... O00757 N/A
    82 5q0c:C (2.4) BS02 FDP 3.1.3.11 GO:0005515 ... O00757 N/A
    83 5q0c:D (2.4) BS02 FDP 3.1.3.11 GO:0005515 ... O00757 N/A
    84 5q0c:E (2.4) BS02 FDP 3.1.3.11 GO:0005515 ... O00757 N/A
    85 5q0c:F (2.4) BS02 FDP 3.1.3.11 GO:0005515 ... O00757 N/A
    86 5q0c:G (2.4) BS02 FDP 3.1.3.11 GO:0005515 ... O00757 N/A
    87 5q0c:H (2.4) BS02 FDP 3.1.3.11 GO:0005515 ... O00757 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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