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BioLiP
Download all results in tab-seperated text for 7 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1abf:A (1.9) BS02 FCB ? GO:0015407 ... P02924 2818726 MOAD: Kd=3.8uM
    2 1apb:A (1.76) BS02 FCB ? GO:0015407 ... P02924 2204627 MOAD: Kd=1.51uM
    PDBbind: -logKd/Ki=5.82, Kd=1.51uM
    3 2aac:A (1.6) BS01 FCB ? GO:0006355 ... P0A9E0 9367758 MOAD: Kd=6mM
    4 2aac:B (1.6) BS01 FCB ? GO:0006355 ... P0A9E0 9367758 MOAD: Kd=6mM
    PDBbind: -logKd/Ki=2.22, Kd=6mM
    5 3wh7:A (1.1) BS01 FCB N/A GO:0004553 ... N/A 27092463
    6 4wut:A (1.5) BS01 FCB ? GO:0030246 ... B9K0B2 N/A
    7 7abp:A (1.67) BS02 FCB ? GO:0015407 ... P02924 2069949 MOAD: Kd=0.35uM
    PDBbind: -logKd/Ki=6.46, Kd=0.35uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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