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BioLiP
Download all results in tab-seperated text for 80 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1urv:A (2.0) BS02 FC6 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 15095869
    2 1urv:A (2.0) BS03 FC6 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 15095869
    3 1urv:B (2.0) BS01 FC6 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 15095869
    4 1urv:B (2.0) BS03 FC6 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 15095869
    5 1ury:A (2.4) BS04 FC6 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 15044115
    6 1ury:A (2.4) BS06 FC6 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 15044115
    7 1ury:B (2.4) BS01 FC6 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 15044115
    8 1ury:B (2.4) BS06 FC6 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 15044115
    9 1ut0:A (2.1) BS02 FC6 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 15095869
    10 1ut0:A (2.1) BS03 FC6 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 15095869
    11 1ut0:B (2.1) BS01 FC6 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 15095869
    12 1ut0:B (2.1) BS03 FC6 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 15095869
    13 1ux9:A (2.4) BS05 FC6 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 15044115
    14 1ux9:A (2.4) BS06 FC6 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 15044115
    15 1ux9:B (2.4) BS01 FC6 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 15044115
    16 1ux9:B (2.4) BS06 FC6 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 15044115
    17 1vzg:A (1.69) BS04 FC6 1.15.1.2 GO:0005506 ... Q46495 15341736
    18 1vzg:B (1.69) BS03 FC6 1.15.1.2 GO:0005506 ... Q46495 15341736
    19 1vzh:A (1.69) BS04 FC6 1.15.1.2 GO:0005506 ... Q46495 15341736
    20 1vzh:B (1.69) BS04 FC6 1.15.1.2 GO:0005506 ... Q46495 15341736
    21 3crw:1 (4.0) BS01 FC6 3.6.4.12 GO:0003676 ... Q4JC68 18510924
    22 3mk7:C (3.2) BS03 FC6 ? GO:0005886 ... D9IA45 20576851
    23 3mk7:C (3.2) BS04 FC6 ? GO:0005886 ... D9IA45 20576851
    24 3mk7:F (3.2) BS03 FC6 ? GO:0005886 ... D9IA45 20576851
    25 3mk7:F (3.2) BS04 FC6 ? GO:0005886 ... D9IA45 20576851
    26 3mk7:I (3.2) BS01 FC6 ? GO:0005886 ... D9IA45 20576851
    27 3mk7:I (3.2) BS02 FC6 ? GO:0005886 ... D9IA45 20576851
    28 3mk7:M (3.2) BS01 FC6 ? GO:0005886 ... D9IA45 20576851
    29 3mk7:M (3.2) BS02 FC6 ? GO:0005886 ... D9IA45 20576851
    30 4b3w:A (2.8) BS02 FC6 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 23308092
    31 4b3w:A (2.8) BS03 FC6 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 23308092
    32 4b3w:B (2.8) BS01 FC6 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 23308092
    33 4b3w:B (2.8) BS03 FC6 1.11.1.-
    1.14.12.-
    1.15.1.1
    1.7.-.-    		 GO:0001666 ... Q8WWM9 23308092
    34 5c0z:B (1.1236) BS02 FC6 ? GO:0002931 ... P62898 31570002
    35 5c0z:C (1.1236) BS01 FC6 ? GO:0002931 ... P62898 31570002
    36 5c0z:C (1.1236) BS03 FC6 ? GO:0002931 ... P62898 31570002
    37 5c0z:D (1.1236) BS01 FC6 ? GO:0002931 ... P62898 31570002
    38 5c9m:A (1.362) BS02 FC6 ? GO:0002931 ... P62898 N/A
    39 5c9m:B (1.362) BS02 FC6 ? GO:0002931 ... P62898 N/A
    40 5c9m:C (1.362) BS01 FC6 ? GO:0002931 ... P62898 N/A
    41 5c9m:C (1.362) BS03 FC6 ? GO:0002931 ... P62898 N/A
    42 5c9m:D (1.362) BS01 FC6 ? GO:0002931 ... P62898 N/A
    43 5df5:B (1.301) BS02 FC6 ? GO:0002931 ... P62898 N/A
    44 5df5:B (1.301) BS03 FC6 ? GO:0002931 ... P62898 N/A
    45 5df5:C (1.301) BS02 FC6 ? GO:0002931 ... P62898 N/A
    46 5djq:C (3.2) BS03 FC6 ? GO:0005886 ... D9IA45 20576851
    47 5djq:C (3.2) BS04 FC6 ? GO:0005886 ... D9IA45 20576851
    48 5djq:F (3.2) BS03 FC6 ? GO:0005886 ... D9IA45 20576851
    49 5djq:F (3.2) BS04 FC6 ? GO:0005886 ... D9IA45 20576851
    50 5djq:I (3.2) BS01 FC6 ? GO:0005886 ... D9IA45 20576851
    51 5djq:I (3.2) BS02 FC6 ? GO:0005886 ... D9IA45 20576851
    52 5djq:M (3.2) BS01 FC6 ? GO:0005886 ... D9IA45 20576851
    53 5djq:M (3.2) BS02 FC6 ? GO:0005886 ... D9IA45 20576851
    54 6i3j:A (2.59) BS05 FC6 1.3.3.5 GO:0005507 ... Q12737 31548583
    55 6i3j:A (2.59) BS06 FC6 1.3.3.5 GO:0005507 ... Q12737 31548583
    56 6i3j:A (2.59) BS07 FC6 1.3.3.5 GO:0005507 ... Q12737 31548583
    57 6i3j:B (2.59) BS05 FC6 1.3.3.5 GO:0005507 ... Q12737 31548583
    58 6i3j:B (2.59) BS06 FC6 1.3.3.5 GO:0005507 ... Q12737 31548583
    59 6i3j:B (2.59) BS07 FC6 1.3.3.5 GO:0005507 ... Q12737 31548583
    60 6i3j:B (2.59) BS08 FC6 1.3.3.5 GO:0005507 ... Q12737 31548583
    61 6i3j:B (2.59) BS09 FC6 1.3.3.5 GO:0005507 ... Q12737 31548583
    62 6i3k:A (1.6) BS05 FC6 1.3.3.5 GO:0005507 ... Q12737 31548583
    63 6i3k:B (1.6) BS05 FC6 1.3.3.5 GO:0005507 ... Q12737 31548583
    64 6i3k:B (1.6) BS06 FC6 1.3.3.5 GO:0005507 ... Q12737 31548583
    65 6n1o:B (1.55) BS02 FC6 ? GO:0002931 ... P62898 31570002
    66 6n1o:B (1.55) BS03 FC6 ? GO:0002931 ... P62898 31570002
    67 6n1o:C (1.55) BS01 FC6 ? GO:0002931 ... P62898 31570002
    68 6n1o:C (1.55) BS03 FC6 ? GO:0002931 ... P62898 31570002
    69 7ljx:A (1.31) BS02 FC6 ? GO:0002931 ... P62898 33916826
    70 7zos:A (1.9) BS02 FC6 ? GO:0019825 ... V5QR23 36009334
    71 8ch9:A (1.43) BS04 FC6 1.20.9.1 GO:0016491 ... Q7SIF4 N/A
    72 8ch9:C (1.43) BS05 FC6 1.20.9.1 GO:0016491 ... Q7SIF4 N/A
    73 8ch9:E (1.43) BS05 FC6 1.20.9.1 GO:0016491 ... Q7SIF4 N/A
    74 8ch9:G (1.43) BS04 FC6 1.20.9.1 GO:0016491 ... Q7SIF4 N/A
    75 8dvx:A (1.5) BS02 FC6 ? GO:0005739 ... P62895 37443314
    76 8dvx:B (1.5) BS02 FC6 ? GO:0005739 ... P62895 37443314
    77 8dvx:B (1.5) BS03 FC6 ? GO:0005739 ... P62895 37443314
    78 8dvx:C (1.5) BS01 FC6 ? GO:0005739 ... P62895 37443314
    79 8dvx:C (1.5) BS03 FC6 ? GO:0005739 ... P62895 37443314
    80 8dvx:D (1.5) BS01 FC6 ? GO:0005739 ... P62895 37443314
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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