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BioLiP
Download all results in tab-seperated text for 66 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a0r:B (2.8) BS01 FAR ? GO:0005515 ... P62871 9739091
    2 1kzo:B (2.2) BS04 FAR 2.5.1.58 GO:0003824 ... Q02293 12374986
    3 1kzp:B (2.1) BS03 FAR 2.5.1.58 GO:0003824 ... Q02293 12374986
    4 1ltx:B (2.7) BS03 FAR 2.5.1.60 GO:0003824 ... Q08603 12620235
    5 2h6f:B (1.5) BS05 FAR 2.5.1.58 GO:0003824 ... P49356 16893176
    6 2h6h:B (1.8) BS05 FAR 2.5.1.58 GO:0003824 ... P49356 16893176
    7 3q79:B (2.506) BS03 FAR N/A GO:0003824 ... N/A 21816822
    8 3t5g:B (1.7) BS01 FAR ? GO:0005095 ... O43924 22002721
    9 3t5i:A (2.1) BS02 FAR ? GO:0005095 ... O43924 22002721
    10 3t5i:B (2.1) BS01 FAR ? GO:0005095 ... O43924 22002721
    11 3t5i:C (2.1) BS01 FAR ? GO:0005095 ... O43924 22002721
    12 3t5i:D (2.1) BS02 FAR ? GO:0005095 ... O43924 22002721
    13 4bg6:B (2.3) BS02 FAR ? GO:0000122 ... P63104 23622247
    14 5dhk:A (2.43) BS03 FAR 4.2.3.61 GO:0000287 ... Q40577 26378620
    15 5f2u:A (1.85) BS02 FAR ? GO:0005095 ... O43924 27063844 PDBbind: -logKd/Ki=8.43, Kd=3.7nM
    16 5f2u:B (1.85) BS02 FAR ? GO:0005095 ... O43924 27063844
    17 5fr2:B (3.35) BS01 FAR ? GO:0001772 ... P19803 26719334
    18 5lnf:A (-1.00) BS01 FAR ? GO:0005777 ... P40855 28281558
    19 5tar:B (1.9) BS01 FAR ? GO:0005095 ... O43924 27791178
    20 5tb5:B (2.0) BS01 FAR ? GO:0005095 ... O43924 27791178
    21 5tb5:D (2.0) BS01 FAR ? GO:0005095 ... O43924 27791178
    22 5u9i:A (2.3) BS01 FAR ? GO:0003755 ... Q9NZN9 28739921 PDBbind: -logKd/Ki=7.31, Kd=49nM
    23 5v35:A (2.5) BS01 FAR ? GO:0003755 ... Q9NZN9 28739921 PDBbind: -logKd/Ki=6.96, Kd=110nM
    24 5zhx:A (3.5) BS01 FAR ? GO:0005085 ... P52306 30190425
    25 5zhx:B (3.5) BS01 FAR ? GO:0005085 ... P52306 30190425
    26 5zhx:C (3.5) BS01 FAR ? GO:0005085 ... P52306 30190425
    27 5zhx:D (3.5) BS01 FAR ? GO:0005085 ... P52306 30190425
    28 6j7f:B (2.883) BS01 FAR 2.5.1.60 GO:0003824 ... P53611 N/A
    29 6j8v:D (2.23) BS01 FAR ? GO:0003677 ... A0A010
    P39476    		 30837154
    30 6k1z:A (2.307) BS01 FAR 3.6.1.-
    3.6.5.-    		 GO:0000139 ... P32455 31216343
    31 7q9r:BBB (2.5) BS01 FAR ? GO:0005095 ... O43924 35104933
    32 7q9s:AAA (1.85) BS02 FAR ? GO:0005095 ... O43924 35104933
    33 7q9s:BBB (1.85) BS03 FAR ? GO:0005095 ... O43924 35104933
    34 7q9u:CCC (2.238) BS01 FAR ? GO:0005095 ... O43924 35104933
    35 7q9u:DDD (2.238) BS01 FAR ? GO:0005095 ... O43924 35104933
    36 7qf9:AAA (1.95) BS02 FAR ? GO:0005095 ... O43924 35104933
    37 7qf9:BBB (1.95) BS01 FAR ? GO:0005095 ... O43924 35104933
    38 7w5j:A (2.05) BS01 FAR 4.2.3.-
    4.2.3.104
    4.2.3.137
    4.2.3.157
    4.2.3.182
    4.2.3.57    		 GO:0016829 ... A0A5S9I252 35504416
    39 8jfk:A (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    40 8jfk:B (2.9) BS01 FAR ? GO:0005515 ... Q93100 38548794
    41 8jfk:B (2.9) BS02 FAR ? GO:0005515 ... Q93100 38548794
    42 8jfk:E (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    43 8jfk:F (2.9) BS01 FAR ? GO:0005515 ... Q93100 38548794
    44 8jfk:F (2.9) BS02 FAR ? GO:0005515 ... Q93100 38548794
    45 8jfk:I (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    46 8jfk:J (2.9) BS01 FAR ? GO:0005515 ... Q93100 38548794
    47 8jfk:J (2.9) BS02 FAR ? GO:0005515 ... Q93100 38548794
    48 8jfk:M (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    49 8jfk:N (2.9) BS01 FAR ? GO:0005515 ... Q93100 38548794
    50 8jfk:N (2.9) BS02 FAR ? GO:0005515 ... Q93100 38548794
    51 8jfl:A (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    52 8jfl:B (2.9) BS01 FAR ? GO:0005515 ... Q93100 38548794
    53 8jfl:B (2.9) BS03 FAR ? GO:0005515 ... Q93100 38548794
    54 8jfl:E (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    55 8jfl:F (2.9) BS01 FAR ? GO:0005515 ... Q93100 38548794
    56 8jfl:F (2.9) BS03 FAR ? GO:0005515 ... Q93100 38548794
    57 8jfl:I (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    58 8jfl:J (2.9) BS01 FAR ? GO:0005515 ... Q93100 38548794
    59 8jfl:J (2.9) BS02 FAR ? GO:0005515 ... Q93100 38548794
    60 8jfl:M (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    61 8jfl:N (2.9) BS01 FAR ? GO:0005515 ... Q93100 38548794
    62 8jfl:N (2.9) BS02 FAR ? GO:0005515 ... Q93100 38548794
    63 8xy7:A (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    64 8xya:A (2.7) BS01 FAR ? GO:0004689 ... P46020 38548794
    65 8xya:B (2.7) BS01 FAR ? GO:0005515 ... Q93100 38548794
    66 8xyb:A (3.1) BS01 FAR ? GO:0004689 ... P46020 38548794
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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