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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 7191 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    7001 8qns:D (3.206) BS02 FAD 1.6.99.- GO:0016491 ... Q9Z0X1 N/A
    7002 8qns:G (3.206) BS02 FAD 1.6.99.- GO:0016491 ... Q9Z0X1 N/A
    7003 8qns:J (3.206) BS02 FAD 1.6.99.- GO:0016491 ... Q9Z0X1 N/A
    7004 8qq1:C (1.941) BS01 FAD 1.18.1.3 GO:0016491 ... A0A4J2B4U9 38640072
    7005 8qq1:F (1.941) BS01 FAD 1.18.1.3 GO:0016491 ... A0A4J2B4U9 38640072
    7006 8qq1:G (1.941) BS01 FAD 1.18.1.3 GO:0016491 ... A0A4J2B4U9 38640072
    7007 8qq5:A (2.5) BS01 FAD 1.18.1.3 GO:0016491 ... A0A4J2B4U9 38640072
    7008 8qq5:B (2.5) BS01 FAD 1.18.1.3 GO:0016491 ... A0A4J2B4U9 38640072
    7009 8qq5:C (2.5) BS01 FAD 1.18.1.3 GO:0016491 ... A0A4J2B4U9 38640072
    7010 8qt6:A (2.29) BS01 FAD N/A GO:0016020 ... Q8CZ28 39039317
    7011 8qt7:A (2.2) BS02 FAD N/A GO:0016020 ... Q8CZ28 39039317
    7012 8qt9:A (2.36) BS01 FAD N/A GO:0016020 ... Q8CZ28 39039317
    7013 8qta:A (2.64) BS02 FAD N/A GO:0016020 ... Q8CZ28 39039317
    7014 8qve:A (1.7) BS01 FAD ? GO:0000166 ... A0A2I9D0D5 38508304
    7015 8rfm:A (2.7) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    7016 8rfm:B (2.7) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    7017 8rfm:C (2.7) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    7018 8rfm:C (2.7) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    7019 8rfm:D (2.7) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    7020 8rfn:A (2.5) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    7021 8rfn:B (2.5) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    7022 8rfn:C (2.5) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    7023 8rfn:C (2.5) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    7024 8rfn:D (2.5) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 38501509
    7025 8rom:A (1.69) BS01 FAD 2.7.7.2 GO:0003824 ... Q8NFF5 38688286
    7026 8rph:A (2.96) BS01 FAD N/A N/A N/A 38874074
    7027 8rph:B (2.96) BS01 FAD N/A N/A N/A 38874074
    7028 8rph:C (2.96) BS01 FAD N/A N/A N/A 38874074
    7029 8rph:D (2.96) BS02 FAD N/A N/A N/A 38874074
    7030 8rph:E (2.96) BS01 FAD N/A N/A N/A 38874074
    7031 8rph:F (2.96) BS01 FAD N/A N/A N/A 38874074
    7032 8rpi:A (2.71) BS01 FAD N/A N/A N/A 38874074
    7033 8rpi:B (2.71) BS02 FAD N/A N/A N/A 38874074
    7034 8rpi:C (2.71) BS01 FAD N/A N/A N/A 38874074
    7035 8rpi:D (2.71) BS01 FAD N/A N/A N/A 38874074
    7036 8rpi:E (2.71) BS01 FAD N/A N/A N/A 38874074
    7037 8rpi:F (2.71) BS01 FAD N/A N/A N/A 38874074
    7038 8rpj:A (1.9) BS02 FAD N/A N/A N/A 38874074
    7039 8rpj:B (1.9) BS03 FAD N/A N/A N/A 38874074
    7040 8rpj:C (1.9) BS02 FAD N/A N/A N/A 38874074
    7041 8rpj:D (1.9) BS02 FAD N/A N/A N/A 38874074
    7042 8rpj:E (1.9) BS03 FAD N/A N/A N/A 38874074
    7043 8rpj:F (1.9) BS03 FAD N/A N/A N/A 38874074
    7044 8rqh:A (2.5) BS01 FAD ? GO:0000166 ... A0A2S1JZI9 38784727
    7045 8rqh:B (2.5) BS01 FAD ? GO:0000166 ... A0A2S1JZI9 38784727
    7046 8sgp:A (2.69) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    7047 8sgp:A (2.69) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    7048 8sgp:B (2.69) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    7049 8sgp:B (2.69) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    7050 8sgp:C (2.69) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    7051 8sgp:C (2.69) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    7052 8sgp:D (2.69) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    7053 8sgp:D (2.69) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 37839702
    7054 8sgr:A (2.84) BS01 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    7055 8sgr:A (2.84) BS02 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    7056 8sgr:B (2.84) BS01 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    7057 8sgr:B (2.84) BS02 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    7058 8sgr:C (2.84) BS01 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    7059 8sgr:C (2.84) BS02 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    7060 8sgr:D (2.84) BS01 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    7061 8sgr:D (2.84) BS02 FAD 1.3.8.1
    1.3.8.4    		 GO:0003995 ... P26440 37839702
    7062 8sgs:A (3.15) BS01 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    7063 8sgs:A (3.15) BS03 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    7064 8sgs:B (3.15) BS01 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    7065 8sgs:B (3.15) BS02 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    7066 8sgs:C (3.15) BS01 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    7067 8sgs:C (3.15) BS03 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    7068 8sgs:D (3.15) BS01 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    7069 8sgs:D (3.15) BS02 FAD 1.3.8.1 GO:0003995 ... P16219 37839702
    7070 8t3p:A (1.9) BS01 FAD ? GO:0000166 ... Q846W9 37805629
    7071 8t3p:B (1.9) BS01 FAD ? GO:0000166 ... Q846W9 37805629
    7072 8t8a:A (3.4) BS01 FAD N/A GO:0004497 ... A0A177SH44 N/A
    7073 8t8a:B (3.4) BS01 FAD N/A GO:0004497 ... A0A177SH44 N/A
    7074 8t8a:C (3.4) BS01 FAD N/A GO:0004497 ... A0A177SH44 N/A
    7075 8t8a:D (3.4) BS01 FAD N/A GO:0004497 ... A0A177SH44 N/A
    7076 8tti:C (1.98) BS01 FAD ? GO:0000166 ... M9QSI0 37662313
    7077 8tti:D (1.98) BS01 FAD ? GO:0000166 ... M9QSI0 37662313
    7078 8twf:A (2.4) BS01 FAD N/A GO:0004497 ... A0A078L5T0 38493211
    7079 8twf:B (2.4) BS01 FAD N/A GO:0004497 ... A0A078L5T0 38493211
    7080 8twf:C (2.4) BS01 FAD N/A GO:0004497 ... A0A078L5T0 38493211
    7081 8twf:D (2.4) BS01 FAD N/A GO:0004497 ... A0A078L5T0 38493211
    7082 8twg:B (1.8) BS01 FAD N/A GO:0004497 ... A0A222NYA8 38493211
    7083 8u0q:A (1.69) BS01 FAD 1.8.1.4 GO:0004148 ... P9WHH9 38144256
    7084 8u0q:B (1.69) BS03 FAD 1.8.1.4 GO:0004148 ... P9WHH9 38144256
    7085 8u7y:A (4.06) BS01 FAD 1.6.3.- GO:0001525 ... Q96PH1 N/A
    7086 8u7y:B (4.06) BS01 FAD 1.6.3.- GO:0001525 ... Q96PH1 N/A
    7087 8u85:A (3.2) BS04 FAD 1.6.3.- GO:0001525 ... Q96PH1 N/A
    7088 8u85:C (3.2) BS05 FAD 1.6.3.- GO:0001525 ... Q96PH1 N/A
    7089 8u86:A (3.3) BS04 FAD 1.6.3.- GO:0001525 ... Q96PH1 N/A
    7090 8u86:C (3.3) BS04 FAD 1.6.3.- GO:0001525 ... Q96PH1 N/A
    7091 8u87:A (3.86) BS04 FAD 1.6.3.- GO:0001525 ... Q96PH1 N/A
    7092 8u87:C (3.86) BS05 FAD 1.6.3.- GO:0001525 ... Q96PH1 N/A
    7093 8ucd:A (3.0) BS02 FAD ? GO:0005515 ... Q9UHE8 37861452
    7094 8ucd:B (3.0) BS02 FAD ? GO:0005515 ... Q9UHE8 37861452
    7095 8ucd:C (3.0) BS03 FAD ? GO:0005515 ... Q9UHE8 37861452
    7096 8uiq:A (2.17) BS01 FAD 1.14.13.114 GO:0071949 ... Q88FY2 38104959
    7097 8uiu:A (3.14) BS01 FAD N/A N/A N/A N/A
    7098 8uiv:A (1.511) BS01 FAD 1.14.13.114 GO:0071949 ... Q88FY2 38104959
    7099 8urc:A (2.5) BS01 FAD N/A N/A N/A 39265075
    7100 8urc:B (2.5) BS01 FAD N/A N/A N/A 39265075
    7101 8urc:C (2.5) BS03 FAD N/A N/A N/A 39265075
    7102 8urd:A (2.8) BS01 FAD N/A N/A N/A 39265075
    7103 8urd:B (2.8) BS01 FAD N/A N/A N/A 39265075
    7104 8urd:C (2.8) BS02 FAD N/A N/A N/A 39265075
    7105 8uub:A (1.5) BS01 FAD ? GO:0000166 ... A0A0H2ZMK9 38604564
    7106 8uy1:A (3.49) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    7107 8uy1:B (3.49) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    7108 8uy1:C (3.49) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    7109 8uy1:D (3.49) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    7110 8uy2:A (2.83) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    7111 8uy2:B (2.83) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    7112 8uy2:C (2.83) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    7113 8uy2:D (2.83) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    7114 8vj3:A (1.9) BS01 FAD 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    7115 8vj3:B (1.9) BS01 FAD 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    7116 8vj3:C (1.9) BS01 FAD 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    7117 8vj3:D (1.9) BS01 FAD 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    7118 8w0k:A (1.42) BS01 FAD N/A N/A F7X6I3 39133178
    7119 8w0k:B (1.42) BS01 FAD N/A N/A F7X6I3 39133178
    7120 8w0t:A (2.5) BS01 FAD N/A GO:0000062 ... P28330 38839792
    7121 8w0t:A (2.5) BS02 FAD N/A GO:0000062 ... P28330 38839792
    7122 8w0t:B (2.5) BS01 FAD N/A GO:0000062 ... P28330 38839792
    7123 8w0t:B (2.5) BS02 FAD N/A GO:0000062 ... P28330 38839792
    7124 8w0t:C (2.5) BS01 FAD N/A GO:0000062 ... P28330 38839792
    7125 8w0t:C (2.5) BS02 FAD N/A GO:0000062 ... P28330 38839792
    7126 8w0t:D (2.5) BS01 FAD N/A GO:0000062 ... P28330 38839792
    7127 8w0t:D (2.5) BS02 FAD N/A GO:0000062 ... P28330 38839792
    7128 8w0u:A (2.8) BS01 FAD N/A GO:0000062 ... P28330 38839792
    7129 8w0u:A (2.8) BS03 FAD N/A GO:0000062 ... P28330 38839792
    7130 8w0u:B (2.8) BS01 FAD N/A GO:0000062 ... P28330 38839792
    7131 8w0u:B (2.8) BS02 FAD N/A GO:0000062 ... P28330 38839792
    7132 8w0u:C (2.8) BS01 FAD N/A GO:0000062 ... P28330 38839792
    7133 8w0u:C (2.8) BS02 FAD N/A GO:0000062 ... P28330 38839792
    7134 8w0u:D (2.8) BS01 FAD N/A GO:0000062 ... P28330 38839792
    7135 8w0u:D (2.8) BS02 FAD N/A GO:0000062 ... P28330 38839792
    7136 8w0z:A (2.0) BS01 FAD N/A GO:0000062 ... P28330 38839792
    7137 8w0z:A (2.0) BS02 FAD N/A GO:0000062 ... P28330 38839792
    7138 8w0z:B (2.0) BS01 FAD N/A GO:0000062 ... P28330 38839792
    7139 8w0z:B (2.0) BS02 FAD N/A GO:0000062 ... P28330 38839792
    7140 8w0z:C (2.0) BS01 FAD N/A GO:0000062 ... P28330 38839792
    7141 8w0z:C (2.0) BS02 FAD N/A GO:0000062 ... P28330 38839792
    7142 8w0z:D (2.0) BS01 FAD N/A GO:0000062 ... P28330 38839792
    7143 8w0z:D (2.0) BS02 FAD N/A GO:0000062 ... P28330 38839792
    7144 8w0z:E (2.0) BS01 FAD N/A GO:0000062 ... P28330 38839792
    7145 8w0z:E (2.0) BS02 FAD N/A GO:0000062 ... P28330 38839792
    7146 8w0z:F (2.0) BS01 FAD N/A GO:0000062 ... P28330 38839792
    7147 8w0z:F (2.0) BS02 FAD N/A GO:0000062 ... P28330 38839792
    7148 8w0z:G (2.0) BS01 FAD N/A GO:0000062 ... P28330 38839792
    7149 8w0z:G (2.0) BS02 FAD N/A GO:0000062 ... P28330 38839792
    7150 8w0z:H (2.0) BS01 FAD N/A GO:0000062 ... P28330 38839792
    7151 8w0z:H (2.0) BS02 FAD N/A GO:0000062 ... P28330 38839792
    7152 8w75:A (2.85) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    7153 8w75:B (2.85) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    7154 8w75:C (2.85) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    7155 8w75:D (2.85) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    7156 8w78:A (2.81) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    7157 8w78:B (2.81) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    7158 8w78:C (2.81) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    7159 8w78:D (2.81) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    7160 8w7f:A (2.299) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    7161 8w7f:B (2.299) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    7162 8w7f:C (2.299) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    7163 8w7f:D (2.299) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    7164 8weq:A (3.29) BS01 FAD N/A N/A A0A4P7SP66 N/A
    7165 8weq:B (3.29) BS01 FAD N/A N/A A0A4P7SP66 N/A
    7166 8weq:C (3.29) BS01 FAD N/A N/A A0A4P7SP66 N/A
    7167 8wvb:A (2.5) BS01 FAD 1.14.13.- GO:0004497 ... B5M9L6 38069118
    7168 8wvb:B (2.5) BS01 FAD 1.14.13.- GO:0004497 ... B5M9L6 38069118
    7169 8wvf:A (3.757) BS01 FAD 1.14.13.- GO:0004497 ... B5M9L6 38069118
    7170 8wvf:B (3.757) BS01 FAD 1.14.13.- GO:0004497 ... B5M9L6 38069118
    7171 8x2l:B (2.99) BS01 FAD 1.-.-.- GO:0005515 ... P04839 38355798
    7172 8x38:A (2.0) BS01 FAD N/A GO:0071949 ... N/A N/A
    7173 8xcm:A (3.08) BS01 FAD 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    7174 8xcn:A (3.02) BS01 FAD 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    7175 8y2s:A (2.0) BS02 FAD 1.14.13.2 GO:0000166 ... A0A233TK29 N/A
    7176 8y6k:A (3.94) BS03 FAD N/A N/A Q8TDZ2 39122694
    7177 8ym7:A (2.83) BS01 FAD 1.14.99.66 N/A O60341 N/A
    7178 9enh:A (2.3) BS01 FAD N/A N/A S4S6Z0 39152524
    7179 9enh:B (2.3) BS01 FAD N/A N/A S4S6Z0 39152524
    7180 9enh:C (2.3) BS01 FAD N/A N/A S4S6Z0 39152524
    7181 9enh:D (2.3) BS01 FAD N/A N/A S4S6Z0 39152524
    7182 9ev3:A (1.219) BS01 FAD N/A N/A Q8NMG5 39080980
    7183 9ev4:A (1.474) BS01 FAD N/A N/A Q8NMG5 39080980
    7184 9ev5:A (1.863) BS03 FAD N/A N/A Q8NMG5 39080980
    7185 9ev5:B (1.863) BS04 FAD N/A N/A Q8NMG5 39080980
    7186 9ev5:C (1.863) BS03 FAD N/A N/A Q8NMG5 39080980
    7187 9ev5:D (1.863) BS04 FAD N/A N/A Q8NMG5 39080980
    7188 9ev6:A (1.891) BS01 FAD N/A N/A Q8NMG5 39080980
    7189 9ev6:B (1.891) BS02 FAD N/A N/A Q8NMG5 39080980
    7190 9ev6:C (1.891) BS01 FAD N/A N/A Q8NMG5 39080980
    7191 9ev6:D (1.891) BS02 FAD N/A N/A Q8NMG5 39080980
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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