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BioLiP
Download all results in tab-seperated text for 7191 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 1u8v:C (1.6) BS02 FAD 4.2.1.120
    5.3.3.3
    GO:0016491 ... P55792 15496473
    802 1u8v:C (1.6) BS03 FAD 4.2.1.120
    5.3.3.3
    GO:0016491 ... P55792 15496473
    803 1u8v:D (1.6) BS01 FAD 4.2.1.120
    5.3.3.3
    GO:0016491 ... P55792 15496473
    804 1u8v:D (1.6) BS03 FAD 4.2.1.120
    5.3.3.3
    GO:0016491 ... P55792 15496473
    805 1udy:A (2.4) BS01 FAD 1.3.8.7 GO:0001889 ... P41367 12966080
    806 1udy:A (2.4) BS03 FAD 1.3.8.7 GO:0001889 ... P41367 12966080
    807 1udy:B (2.4) BS01 FAD 1.3.8.7 GO:0001889 ... P41367 12966080
    808 1udy:B (2.4) BS02 FAD 1.3.8.7 GO:0001889 ... P41367 12966080
    809 1udy:C (2.4) BS01 FAD 1.3.8.7 GO:0001889 ... P41367 12966080
    810 1udy:C (2.4) BS03 FAD 1.3.8.7 GO:0001889 ... P41367 12966080
    811 1udy:D (2.4) BS01 FAD 1.3.8.7 GO:0001889 ... P41367 12966080
    812 1udy:D (2.4) BS02 FAD 1.3.8.7 GO:0001889 ... P41367 12966080
    813 1ukw:A (2.4) BS01 FAD 1.3.99.- GO:0000166 ... Q72JJ3 N/A
    814 1ukw:B (2.4) BS02 FAD 1.3.99.- GO:0000166 ... Q72JJ3 N/A
    815 1umk:A (1.75) BS01 FAD 1.6.2.2 GO:0004128 ... P00387 15502298
    816 1uxy:A (1.8) BS01 FAD 1.3.1.98 GO:0005737 ... P08373 9020778
    817 1v0j:A (2.25) BS01 FAD 5.4.99.9 GO:0005829 ... P9WIQ1 15843027
    818 1v0j:B (2.25) BS01 FAD 5.4.99.9 GO:0005829 ... P9WIQ1 15843027
    819 1v0j:C (2.25) BS01 FAD 5.4.99.9 GO:0005829 ... P9WIQ1 15843027
    820 1v0j:D (2.25) BS01 FAD 5.4.99.9 GO:0005829 ... P9WIQ1 15843027
    821 1v59:A (2.2) BS01 FAD 1.8.1.4 GO:0004148 ... P09624 N/A
    822 1v59:B (2.2) BS01 FAD 1.8.1.4 GO:0004148 ... P09624 N/A
    823 1v5e:A (1.6) BS01 FAD 1.2.3.3 GO:0000166 ... A9X9K8 N/A
    824 1v5f:A (1.8) BS02 FAD N/A GO:0000287 ... N/A 18007037
    825 1v5g:A (1.96) BS02 FAD N/A GO:0000287 ... N/A 18007037
    826 1v93:A (1.9) BS01 FAD 1.5.1.54 GO:0000166 ... Q9RA47 N/A
    827 1v97:A (1.94) BS04 FAD 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 15148401
    828 1v97:B (1.94) BS04 FAD 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 15148401
    829 1vao:A (2.5) BS01 FAD 1.1.3.38 GO:0003824 ... P56216 9261083
    830 1vao:B (2.5) BS01 FAD 1.1.3.38 GO:0003824 ... P56216 9261083
    831 1vdc:A (2.5) BS01 FAD 1.8.1.9 GO:0004791 ... Q39243 9000629
    832 1vdv:A (1.98) BS05 FAD 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 15190124
    833 1vdv:B (1.98) BS05 FAD 1.17.1.4
    1.17.3.2
    GO:0002197 ... P80457 15190124
    834 1ve9:A (2.5) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 8864836
    835 1ve9:B (2.5) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 8864836
    836 1vqw:A (2.4) BS01 FAD 1.14.13.- GO:0004497 ... Q9HFE4 16777962
    837 1vqw:B (2.4) BS01 FAD 1.14.13.- GO:0004497 ... Q9HFE4 16777962
    838 1vrq:B (2.2) BS01 FAD 1.5.3.24 GO:0000166 ... Q50LF2 15946648
    839 1w07:A (2.0) BS01 FAD 1.3.3.6 GO:0001676 ... O65202 15581893
    840 1w07:A (2.0) BS03 FAD 1.3.3.6 GO:0001676 ... O65202 15581893
    841 1w07:B (2.0) BS01 FAD 1.3.3.6 GO:0001676 ... O65202 15581893
    842 1w07:B (2.0) BS02 FAD 1.3.3.6 GO:0001676 ... O65202 15581893
    843 1w1j:A (2.7) BS01 FAD 1.1.3.38 GO:0003824 ... P56216 15169773
    844 1w1j:B (2.7) BS01 FAD 1.1.3.38 GO:0003824 ... P56216 15169773
    845 1w1k:A (2.55) BS01 FAD 1.1.3.38 GO:0003824 ... P56216 15169773
    846 1w1k:B (2.55) BS01 FAD 1.1.3.38 GO:0003824 ... P56216 15169773
    847 1w1l:A (2.7) BS01 FAD 1.1.3.38 GO:0003824 ... P56216 15169773
    848 1w1l:B (2.7) BS01 FAD 1.1.3.38 GO:0003824 ... P56216 15169773
    849 1w1m:A (3.0) BS01 FAD 1.1.3.38 GO:0003824 ... P56216 15169773
    850 1w1m:B (3.0) BS01 FAD 1.1.3.38 GO:0003824 ... P56216 15169773
    851 1w1o:A (1.7) BS01 FAD 1.5.99.12 GO:0003824 ... Q9T0N8 15321719
    852 1w1q:A (1.8) BS01 FAD 1.5.99.12 GO:0003824 ... Q9T0N8 15321719
    853 1w1r:A (1.9) BS01 FAD 1.5.99.12 GO:0003824 ... Q9T0N8 15321719
    854 1w1s:A (2.0) BS01 FAD 1.5.99.12 GO:0003824 ... Q9T0N8 15321719
    855 1w34:A (1.73) BS01 FAD 1.18.1.2 GO:0016491 ... P21890 16216071
    856 1w35:A (1.9) BS01 FAD 1.18.1.2 GO:0016491 ... P21890 16216071
    857 1w4x:A (1.7) BS01 FAD 1.14.13.92 GO:0004497 ... Q47PU3 15328411
    858 1w87:A (3.0) BS01 FAD 1.18.1.2 GO:0016491 ... P21890 16216071
    859 1w87:B (3.0) BS02 FAD 1.18.1.2 GO:0016491 ... P21890 16216071
    860 1wam:A (2.35) BS01 FAD 5.4.99.9 GO:0008767 ... Q48485 15843027
    861 1wve:A (1.85) BS01 FAD 1.17.9.1 GO:0003824 ... P09788 15723539
    862 1wve:B (1.85) BS01 FAD 1.17.9.1 GO:0003824 ... P09788 15723539
    863 1wvf:A (1.3) BS01 FAD 1.17.9.1 GO:0003824 ... P09788 15723539
    864 1wyg:A (2.6) BS04 FAD 1.17.1.4
    1.17.3.2
    GO:0000255 ... P22985 15878860
    865 1x0p:A (2.0) BS01 FAD ? GO:0000166 ... Q8DMN3 15876364
    866 1x0p:B (2.0) BS01 FAD ? GO:0000166 ... Q8DMN3 15876364
    867 1x0p:C (2.0) BS01 FAD ? GO:0000166 ... Q8DMN3 15876364
    868 1x0p:D (2.0) BS01 FAD ? GO:0000166 ... Q8DMN3 15876364
    869 1x0p:E (2.0) BS01 FAD ? GO:0000166 ... Q8DMN3 15876364
    870 1x0p:F (2.0) BS01 FAD ? GO:0000166 ... Q8DMN3 15876364
    871 1x0p:G (2.0) BS01 FAD ? GO:0000166 ... Q8DMN3 15876364
    872 1x0p:H (2.0) BS01 FAD ? GO:0000166 ... Q8DMN3 15876364
    873 1x0p:I (2.0) BS01 FAD ? GO:0000166 ... Q8DMN3 15876364
    874 1x0p:J (2.0) BS01 FAD ? GO:0000166 ... Q8DMN3 15876364
    875 1x31:B (2.15) BS01 FAD 1.5.3.24 GO:0000166 ... Q50LF2 15946648
    876 1xan:A (2.0) BS01 FAD 1.8.1.7 GO:0004362 ... P00390 8626496
    877 1xdi:A (2.81) BS01 FAD 1.6.5.2 GO:0003955 ... P9WHH7 15456792
    878 1xdi:B (2.81) BS01 FAD 1.6.5.2 GO:0003955 ... P9WHH7 15456792
    879 1xhc:A (2.35) BS01 FAD 1.18.1.4 GO:0000166 ... Q8U1K9 N/A
    880 1xi2:A (1.5) BS02 FAD 1.10.5.1 GO:0001512 ... P16083 16129418
    881 1xi2:B (1.5) BS03 FAD 1.10.5.1 GO:0001512 ... P16083 16129418
    882 1xpq:A (2.51) BS02 FAD 1.5.3.17 GO:0003682 ... P50264 15843025
    883 1xpq:B (2.51) BS02 FAD 1.5.3.17 GO:0003682 ... P50264 15843025
    884 1xpq:C (2.51) BS02 FAD 1.5.3.17 GO:0003682 ... P50264 15843025
    885 1xpq:D (2.51) BS02 FAD 1.5.3.17 GO:0003682 ... P50264 15843025
    886 1y0p:A (1.5) BS05 FAD 1.3.2.4 GO:0008202 ... P0C278 N/A
    887 1y56:B (2.86) BS02 FAD 1.5.99.8 GO:0000166 ... O59089 16027125
    888 1y9d:A (2.2) BS03 FAD 1.2.3.3 GO:0000287 ... P37063 15794646
    889 1y9d:B (2.2) BS03 FAD 1.2.3.3 GO:0000287 ... P37063 15794646
    890 1y9d:C (2.2) BS04 FAD 1.2.3.3 GO:0000287 ... P37063 15794646
    891 1y9d:D (2.2) BS04 FAD 1.2.3.3 GO:0000287 ... P37063 15794646
    892 1ybh:A (2.5) BS03 FAD 2.2.1.6 GO:0000287 ... P17597 16407096
    893 1yhy:A (2.7) BS03 FAD 2.2.1.6 GO:0000287 ... P17597 16407096
    894 1yhz:A (2.7) BS03 FAD 2.2.1.6 GO:0000287 ... P17597 16407096
    895 1yi0:A (2.7) BS03 FAD 2.2.1.6 GO:0000287 ... P17597 16407096
    896 1yi1:A (2.9) BS03 FAD 2.2.1.6 GO:0000287 ... P17597 16407096
    897 1ykj:A (2.0) BS01 FAD 1.14.13.2 GO:0004497 ... P20586 15924424
    898 1ykj:B (2.0) BS01 FAD 1.14.13.2 GO:0004497 ... P20586 15924424
    899 1yoa:A (1.9) BS01 FAD ? GO:0000166 ... Q5SL73 N/A
    900 1yq3:A (2.2) BS01 FAD 1.3.5.1 GO:0005739 ... Q9YHT1 16371358
    901 1yq4:A (2.33) BS01 FAD 1.3.5.1 GO:0005739 ... Q9YHT1 16371358
    902 1yqz:A (1.54) BS04 FAD 1.8.1.14 GO:0003756 ... O52582 16981688
    903 1yqz:A (1.54) BS06 FAD 1.8.1.14 GO:0003756 ... O52582 16981688
    904 1yqz:B (1.54) BS03 FAD 1.8.1.14 GO:0003756 ... O52582 16981688
    905 1yqz:B (1.54) BS06 FAD 1.8.1.14 GO:0003756 ... O52582 16981688
    906 1yy5:A (2.3) BS01 FAD 1.5.3.17 GO:0003682 ... P50264 15843025
    907 1yy5:B (2.3) BS01 FAD 1.5.3.17 GO:0003682 ... P50264 15843025
    908 1z6l:A (2.5) BS01 FAD 1.5.3.17 GO:0003682 ... P50264 N/A
    909 1z6l:B (2.5) BS01 FAD 1.5.3.17 GO:0003682 ... P50264 N/A
    910 1z8n:A (2.8) BS04 FAD 2.2.1.6 GO:0000287 ... P17597 16407096
    911 1zdl:A (3.0) BS01 FAD 1.8.1.9 GO:0000305 ... Q9JLT4 16217027
    912 1zk7:A (1.6) BS01 FAD 1.16.1.1 GO:0016152 ... P00392 16114877
    913 1zkq:A (2.6) BS01 FAD 1.8.1.9 GO:0000305 ... Q9JLT4 16217027
    914 1zmc:A (2.53) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 15946682
    915 1zmc:B (2.53) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 15946682
    916 1zmc:C (2.53) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 15946682
    917 1zmc:D (2.53) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 15946682
    918 1zmc:E (2.53) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 15946682
    919 1zmc:F (2.53) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 15946682
    920 1zmc:G (2.53) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 15946682
    921 1zmc:H (2.53) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 15946682
    922 1zmd:A (2.08) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 15946682
    923 1zmd:B (2.08) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 15946682
    924 1zmd:C (2.08) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 15946682
    925 1zmd:D (2.08) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 15946682
    926 1zmd:E (2.08) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 15946682
    927 1zmd:F (2.08) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 15946682
    928 1zmd:G (2.08) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 15946682
    929 1zmd:H (2.08) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 15946682
    930 1zov:A (1.86) BS01 FAD 1.5.3.1 GO:0005737 ... P23342 N/A
    931 1zov:B (1.86) BS01 FAD 1.5.3.1 GO:0005737 ... P23342 N/A
    932 1zoy:A (2.4) BS01 FAD 1.3.5.1 GO:0005515 ... Q0QF01 15989954
    933 1zp0:A (3.5) BS01 FAD 1.3.5.1 GO:0005515 ... Q0QF01 15989954
    934 1zp3:A (1.85) BS01 FAD 1.5.1.54 GO:0004489 ... P0AEZ1 16114881
    935 1zp3:B (1.85) BS01 FAD 1.5.1.54 GO:0004489 ... P0AEZ1 16114881
    936 1zp3:C (1.85) BS01 FAD 1.5.1.54 GO:0004489 ... P0AEZ1 16114881
    937 1zp4:A (1.85) BS02 FAD 1.5.1.54 GO:0004489 ... P0AEZ1 16114881
    938 1zp4:B (1.85) BS02 FAD 1.5.1.54 GO:0004489 ... P0AEZ1 16114881
    939 1zp4:C (1.85) BS02 FAD 1.5.1.54 GO:0004489 ... P0AEZ1 16114881
    940 1zpt:A (1.95) BS01 FAD 1.5.1.54 GO:0004489 ... P0AEZ1 16114881
    941 1zpt:B (1.95) BS01 FAD 1.5.1.54 GO:0004489 ... P0AEZ1 16114881
    942 1zpt:C (1.95) BS01 FAD 1.5.1.54 GO:0004489 ... P0AEZ1 16114881
    943 1zr6:A (1.55) BS03 FAD 1.1.3.- GO:0000166 ... Q6PW77 16154992
    944 1zrq:A (2.2) BS01 FAD 1.5.1.54 GO:0004489 ... P0AEZ1 16114881
    945 1zrq:B (2.2) BS01 FAD 1.5.1.54 GO:0004489 ... P0AEZ1 16114881
    946 1zrq:C (2.2) BS01 FAD 1.5.1.54 GO:0004489 ... P0AEZ1 16114881
    947 1zx1:A (2.16) BS02 FAD 1.10.5.1 GO:0001512 ... P16083 N/A
    948 1zx1:B (2.16) BS02 FAD 1.10.5.1 GO:0001512 ... P16083 N/A
    949 1zx9:A (1.9) BS01 FAD 1.16.1.1 GO:0016152 ... P00392 16114877
    950 1zxi:A (1.7) BS04 FAD 1.2.5.3 GO:0008805 ... P19921 16091936
    951 1zxi:C (1.7) BS01 FAD 1.2.5.3 GO:0008805 ... P19920 16091936
    952 1zxi:D (1.7) BS04 FAD 1.2.5.3 GO:0008805 ... P19921 16091936
    953 1zxi:F (1.7) BS01 FAD 1.2.5.3 GO:0008805 ... P19920 16091936
    954 1zy8:A (2.59) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 16263718
    955 1zy8:B (2.59) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 16263718
    956 1zy8:C (2.59) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 16263718
    957 1zy8:D (2.59) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 16263718
    958 1zy8:E (2.59) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 16263718
    959 1zy8:F (2.59) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 16263718
    960 1zy8:G (2.59) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 16263718
    961 1zy8:H (2.59) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 16263718
    962 1zy8:I (2.59) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 16263718
    963 1zy8:J (2.59) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 16263718
    964 2a1t:A (2.8) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 15975918
    965 2a1t:A (2.8) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 15975918
    966 2a1t:B (2.8) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 15975918
    967 2a1t:B (2.8) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 15975918
    968 2a1t:C (2.8) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 15975918
    969 2a1t:C (2.8) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 15975918
    970 2a1t:C (2.8) BS03 FAD 1.3.8.7 GO:0001889 ... P11310 15975918
    971 2a1t:D (2.8) BS01 FAD 1.3.8.7 GO:0001889 ... P11310 15975918
    972 2a1t:D (2.8) BS02 FAD 1.3.8.7 GO:0001889 ... P11310 15975918
    973 2a1t:R (2.8) BS01 FAD ? GO:0005515 ... P13804 15975918
    974 2a1u:A (2.11) BS01 FAD ? GO:0005515 ... P13804 15975918
    975 2a1u:B (2.11) BS01 FAD ? GO:0005515 ... P38117 15975918
    976 2a87:A (3.0) BS01 FAD 1.8.1.9 GO:0001666 ... P9WHH1 16301794
    977 2a87:B (3.0) BS01 FAD 1.8.1.9 GO:0001666 ... P9WHH1 16301794
    978 2a8x:A (2.4) BS01 FAD 1.8.1.4 GO:0004148 ... P9WHH9 16093239
    979 2a8x:B (2.4) BS01 FAD 1.8.1.4 GO:0004148 ... P9WHH9 16093239
    980 2aaq:A (2.6) BS01 FAD 1.8.1.7 GO:0004362 ... P00390 16493712
    981 2acz:A (3.1) BS02 FAD 1.3.5.1 GO:0000104 ... P0AC41 16407191
    982 2af6:A (2.01) BS01 FAD 2.1.1.148 GO:0004799 ... P9WG57 16139296
    983 2af6:A (2.01) BS03 FAD 2.1.1.148 GO:0004799 ... P9WG57 16139296
    984 2af6:A (2.01) BS04 FAD 2.1.1.148 GO:0004799 ... P9WG57 16139296
    985 2af6:B (2.01) BS01 FAD 2.1.1.148 GO:0004799 ... P9WG57 16139296
    986 2af6:B (2.01) BS02 FAD 2.1.1.148 GO:0004799 ... P9WG57 16139296
    987 2af6:B (2.01) BS04 FAD 2.1.1.148 GO:0004799 ... P9WG57 16139296
    988 2af6:C (2.01) BS01 FAD 2.1.1.148 GO:0004799 ... P9WG57 16139296
    989 2af6:C (2.01) BS03 FAD 2.1.1.148 GO:0004799 ... P9WG57 16139296
    990 2af6:C (2.01) BS05 FAD 2.1.1.148 GO:0004799 ... P9WG57 16139296
    991 2af6:D (2.01) BS01 FAD 2.1.1.148 GO:0004799 ... P9WG57 16139296
    992 2af6:D (2.01) BS03 FAD 2.1.1.148 GO:0004799 ... P9WG57 16139296
    993 2af6:D (2.01) BS04 FAD 2.1.1.148 GO:0004799 ... P9WG57 16139296
    994 2af6:E (2.01) BS01 FAD 2.1.1.148 GO:0004799 ... P9WG57 16139296
    995 2af6:E (2.01) BS03 FAD 2.1.1.148 GO:0004799 ... P9WG57 16139296
    996 2af6:E (2.01) BS04 FAD 2.1.1.148 GO:0004799 ... P9WG57 16139296
    997 2af6:F (2.01) BS01 FAD 2.1.1.148 GO:0004799 ... P9WG57 16139296
    998 2af6:F (2.01) BS02 FAD 2.1.1.148 GO:0004799 ... P9WG57 16139296
    999 2af6:F (2.01) BS04 FAD 2.1.1.148 GO:0004799 ... P9WG57 16139296
    1000 2af6:G (2.01) BS01 FAD 2.1.1.148 GO:0004799 ... P9WG57 16139296

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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