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BioLiP
Download all results in tab-seperated text for 7191 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4401 5lfo:A (1.66) BS01 FAD 1.5.3.13 GO:0016491 ... Q8C0L6 28029774
    4402 5lgn:A (3.2) BS01 FAD 1.14.99.66 GO:0005634 ... O60341 28186755
    4403 5lgt:A (3.0) BS01 FAD 1.14.99.66 GO:0005634 ... O60341 28186757
    4404 5lgu:A (3.2) BS01 FAD 1.14.99.66 GO:0005634 ... O60341 28186757
    4405 5lhg:A (3.34) BS01 FAD 1.14.99.66 GO:0000122 ... O60341 28186757
    4406 5lhh:A (3.05) BS01 FAD 1.14.99.66 GO:0000122 ... O60341 28186757
    4407 5lhi:A (3.4) BS01 FAD 1.14.99.66 GO:0000122 ... O60341 28186757
    4408 5lnx:A (2.6) BS01 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    4409 5lnx:A (2.6) BS02 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    4410 5lnx:B (2.6) BS01 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    4411 5lnx:B (2.6) BS02 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    4412 5lnx:C (2.6) BS01 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    4413 5lnx:C (2.6) BS02 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    4414 5lnx:D (2.6) BS01 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    4415 5lnx:D (2.6) BS02 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    4416 5lnx:E (2.6) BS01 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    4417 5lnx:E (2.6) BS02 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    4418 5lnx:F (2.6) BS01 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    4419 5lnx:F (2.6) BS02 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    4420 5lnx:G (2.6) BS01 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    4421 5lnx:G (2.6) BS02 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    4422 5lnx:H (2.6) BS01 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    4423 5lnx:H (2.6) BS02 FAD 1.3.99.- GO:0003995 ... P45857 N/A
    4424 5lvw:A (2.9) BS01 FAD ? GO:0000166 ... I7IIA9 28643772
    4425 5m0z:A (1.6) BS01 FAD 1.14.13.22 GO:0000166 ... A0A1L1QK39 27873437
    4426 5m10:A (1.22) BS01 FAD 1.14.13.22 GO:0000166 ... A0A1L1QK40 27873437
    4427 5m5j:A (2.65) BS01 FAD 1.8.1.9 GO:0000166 ... E2RU27 28477573
    4428 5m5j:B (2.65) BS01 FAD 1.8.1.9 GO:0000166 ... E2RU27 28477573
    4429 5mbx:A (1.4) BS01 FAD 1.5.3.13 GO:0005737 ... Q8C0L6 28029774
    4430 5mh4:A (2.14) BS01 FAD 1.8.1.9 GO:0000166 ... A2RLJ5 28397795
    4431 5mip:A (2.0) BS01 FAD 1.8.1.9 GO:0000166 ... A2RLJ5 28397795
    4432 5miq:A (1.92) BS01 FAD 1.8.1.9 GO:0000166 ... A2RLJ5 28397795
    4433 5mir:A (2.0) BS01 FAD 1.8.1.9 GO:0000166 ... A2RLJ5 28397795
    4434 5mis:A (1.81) BS01 FAD 1.8.1.9 GO:0000166 ... A2RLJ5 28397795
    4435 5mit:A (1.8) BS01 FAD 1.8.1.9 GO:0000166 ... A2RLJ5 28397795
    4436 5miu:A (3.5) BS01 FAD 1.6.99.- GO:0016491 ... Q9Z0X1 28666871
    4437 5miu:B (3.5) BS01 FAD 1.6.99.- GO:0016491 ... Q9Z0X1 28666871
    4438 5miv:A (3.1) BS02 FAD 1.6.99.- GO:0016491 ... Q9Z0X1 28666871
    4439 5miv:C (3.1) BS02 FAD 1.6.99.- GO:0016491 ... Q9Z0X1 28666871
    4440 5mjk:A (2.0) BS01 FAD 1.8.1.9 GO:0000166 ... A2RLJ5 28397795
    4441 5mjk:B (2.0) BS01 FAD 1.8.1.9 GO:0000166 ... A2RLJ5 28397795
    4442 5mjk:C (2.0) BS01 FAD 1.8.1.9 GO:0000166 ... A2RLJ5 28397795
    4443 5mjk:D (2.0) BS01 FAD 1.8.1.9 GO:0000166 ... A2RLJ5 28397795
    4444 5mog:A (2.77) BS01 FAD 1.3.5.5 GO:0016117 ... A2XDA1 28669634
    4445 5mog:B (2.77) BS01 FAD 1.3.5.5 GO:0016117 ... A2XDA1 28669634
    4446 5mog:C (2.77) BS01 FAD 1.3.5.5 GO:0016117 ... A2XDA1 28669634
    4447 5mog:D (2.77) BS01 FAD 1.3.5.5 GO:0016117 ... A2XDA1 28669634
    4448 5mog:E (2.77) BS01 FAD 1.3.5.5 GO:0016117 ... A2XDA1 28669634
    4449 5mq6:A (2.0) BS01 FAD ? GO:0000166 ... G2QA95 28010060
    4450 5mr6:A (2.4) BS01 FAD ? GO:0000166 ... I7IIA9 28643772
    4451 5mr6:B (2.4) BS01 FAD ? GO:0000166 ... I7IIA9 28643772
    4452 5mr6:C (2.4) BS01 FAD ? GO:0000166 ... I7IIA9 28643772
    4453 5mr6:D (2.4) BS01 FAD ? GO:0000166 ... I7IIA9 28643772
    4454 5mr6:D (2.4) BS02 FAD ? GO:0000166 ... I7IIA9 28643772
    4455 5mr6:E (2.4) BS01 FAD ? GO:0000166 ... I7IIA9 28643772
    4456 5mr6:E (2.4) BS02 FAD ? GO:0000166 ... I7IIA9 28643772
    4457 5mr6:F (2.4) BS01 FAD ? GO:0000166 ... I7IIA9 28643772
    4458 5mr6:G (2.4) BS01 FAD ? GO:0000166 ... I7IIA9 28643772
    4459 5mr6:G (2.4) BS02 FAD ? GO:0000166 ... I7IIA9 28643772
    4460 5mr6:H (2.4) BS01 FAD ? GO:0000166 ... I7IIA9 28643772
    4461 5mr6:H (2.4) BS02 FAD ? GO:0000166 ... I7IIA9 28643772
    4462 5mr6:I (2.4) BS01 FAD ? GO:0000166 ... I7IIA9 28643772
    4463 5mr6:J (2.4) BS01 FAD ? GO:0000166 ... I7IIA9 28643772
    4464 5mr6:J (2.4) BS02 FAD ? GO:0000166 ... I7IIA9 28643772
    4465 5mr6:K (2.4) BS01 FAD ? GO:0000166 ... I7IIA9 28643772
    4466 5mr6:K (2.4) BS02 FAD ? GO:0000166 ... I7IIA9 28643772
    4467 5mr6:L (2.4) BS01 FAD ? GO:0000166 ... I7IIA9 28643772
    4468 5mr6:L (2.4) BS02 FAD ? GO:0000166 ... I7IIA9 28643772
    4469 5mr6:M (2.4) BS01 FAD ? GO:0000166 ... I7IIA9 28643772
    4470 5mr6:N (2.4) BS01 FAD ? GO:0000166 ... I7IIA9 28643772
    4471 5mr6:N (2.4) BS02 FAD ? GO:0000166 ... I7IIA9 28643772
    4472 5mr6:O (2.4) BS01 FAD ? GO:0000166 ... I7IIA9 28643772
    4473 5mr6:O (2.4) BS02 FAD ? GO:0000166 ... I7IIA9 28643772
    4474 5mr6:P (2.4) BS01 FAD ? GO:0000166 ... I7IIA9 28643772
    4475 5mr6:P (2.4) BS02 FAD ? GO:0000166 ... I7IIA9 28643772
    4476 5mr6:Q (2.4) BS01 FAD ? GO:0000166 ... I7IIA9 28643772
    4477 5mr6:Q (2.4) BS02 FAD ? GO:0000166 ... I7IIA9 28643772
    4478 5mr6:R (2.4) BS01 FAD ? GO:0000166 ... I7IIA9 28643772
    4479 5mr6:S (2.4) BS01 FAD ? GO:0000166 ... I7IIA9 28643772
    4480 5mr6:S (2.4) BS02 FAD ? GO:0000166 ... I7IIA9 28643772
    4481 5mr6:T (2.4) BS01 FAD ? GO:0000166 ... I7IIA9 28643772
    4482 5mr6:U (2.4) BS01 FAD ? GO:0000166 ... I7IIA9 28643772
    4483 5mr6:U (2.4) BS02 FAD ? GO:0000166 ... I7IIA9 28643772
    4484 5mr6:V (2.4) BS01 FAD ? GO:0000166 ... I7IIA9 28643772
    4485 5mr6:W (2.4) BS01 FAD ? GO:0000166 ... I7IIA9 28643772
    4486 5mr6:W (2.4) BS02 FAD ? GO:0000166 ... I7IIA9 28643772
    4487 5mr6:X (2.4) BS01 FAD ? GO:0000166 ... I7IIA9 28643772
    4488 5mrl:A (2.42) BS01 FAD 1.4.3.21
    1.4.3.4
    GO:0005515 ... P27338 27977122
    4489 5mrl:B (2.42) BS01 FAD 1.4.3.21
    1.4.3.4
    GO:0005515 ... P27338 27977122
    4490 5mxj:A (2.8) BS01 FAD 1.1.3.38 GO:0003824 ... P56216 28717004
    4491 5mxj:B (2.8) BS01 FAD 1.1.3.38 GO:0003824 ... P56216 28717004
    4492 5mxu:A (2.8) BS01 FAD 1.1.3.38 GO:0003824 ... P56216 28717004
    4493 5mxu:B (2.8) BS01 FAD 1.1.3.38 GO:0003824 ... P56216 28717004
    4494 5mzc:A (1.82) BS01 FAD 1.14.13.9 GO:0003824 ... Q84HF5 28398044
    4495 5mzc:B (1.82) BS02 FAD 1.14.13.9 GO:0003824 ... Q84HF5 28398044
    4496 5mzi:A (1.71) BS01 FAD 1.14.13.9 GO:0003824 ... Q84HF5 28398044
    4497 5mzi:B (1.71) BS01 FAD 1.14.13.9 GO:0003824 ... Q84HF5 28398044
    4498 5mzk:A (1.82) BS01 FAD 1.14.13.9 GO:0003824 ... Q84HF5 28398044
    4499 5mzk:B (1.82) BS01 FAD 1.14.13.9 GO:0003824 ... Q84HF5 28398044
    4500 5n0j:A (1.949) BS01 FAD ? GO:0000166 ... Q7NCP4 29133410
    4501 5n0j:A (1.949) BS02 FAD ? GO:0000166 ... Q7NCP4 29133410
    4502 5n0j:B (1.949) BS01 FAD ? GO:0000166 ... Q7NCP4 29133410
    4503 5n0j:B (1.949) BS02 FAD ? GO:0000166 ... Q7NCP4 29133410
    4504 5n1t:A (2.6) BS01 FAD ? GO:0016491 ... W0DP88 29968673
    4505 5n7t:A (1.81) BS01 FAD 1.14.13.9 GO:0003824 ... Q84HF5 28336141
    4506 5n7t:B (1.81) BS01 FAD 1.14.13.9 GO:0003824 ... Q84HF5 28336141
    4507 5na1:A (2.32) BS01 FAD 1.6.5.9 GO:0003955 ... Q2FZV7 28801048
    4508 5na4:A (2.55) BS01 FAD 1.6.5.9 GO:0003955 ... Q2FZV7 28801048
    4509 5na5:A (1.94) BS01 FAD 1.14.13.9 GO:0003824 ... Q84HF5 28604669
    4510 5na5:B (1.94) BS01 FAD 1.14.13.9 GO:0003824 ... Q84HF5 28604669
    4511 5nab:A (1.63) BS01 FAD 1.14.13.9 GO:0003824 ... Q84HF5 28604669
    4512 5nab:B (1.63) BS01 FAD 1.14.13.9 GO:0003824 ... Q84HF5 28604669
    4513 5nae:A (1.76) BS01 FAD 1.14.13.9 GO:0003824 ... Q84HF5 28604669
    4514 5nae:B (1.76) BS01 FAD 1.14.13.9 GO:0003824 ... Q84HF5 28604669
    4515 5nag:A (1.68) BS01 FAD 1.14.13.9 GO:0003824 ... Q84HF5 28604669
    4516 5nag:B (1.68) BS01 FAD 1.14.13.9 GO:0003824 ... Q84HF5 28604669
    4517 5nah:A (1.75) BS01 FAD 1.14.13.9 GO:0003824 ... Q84HF5 28604669
    4518 5nah:B (1.75) BS01 FAD 1.14.13.9 GO:0003824 ... Q84HF5 28604669
    4519 5nak:A (1.5) BS01 FAD 1.14.13.9 GO:0003824 ... Q84HF5 28604669
    4520 5nak:B (1.5) BS01 FAD 1.14.13.9 GO:0003824 ... Q84HF5 28604669
    4521 5ncc:A (3.12) BS01 FAD 4.1.1.106 GO:0008812 ... A0A248QE08 28860382
    4522 5ncc:B (3.12) BS01 FAD 4.1.1.106 GO:0008812 ... A0A248QE08 28860382
    4523 5ncc:C (3.12) BS01 FAD 4.1.1.106 GO:0008812 ... A0A248QE08 28860382
    4524 5ncc:D (3.12) BS01 FAD 4.1.1.106 GO:0008812 ... A0A248QE08 28860382
    4525 5ncc:E (3.12) BS01 FAD 4.1.1.106 GO:0008812 ... A0A248QE08 28860382
    4526 5ncc:F (3.12) BS01 FAD 4.1.1.106 GO:0008812 ... A0A248QE08 28860382
    4527 5nhg:A (2.27) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 29908278
    4528 5nhg:B (2.27) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 29908278
    4529 5nhg:C (2.27) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 29908278
    4530 5nhg:D (2.27) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 29908278
    4531 5nhg:E (2.27) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 29908278
    4532 5nhg:F (2.27) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 29908278
    4533 5nhg:G (2.27) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 29908278
    4534 5nhg:H (2.27) BS01 FAD 1.8.1.4 GO:0001669 ... P09622 29908278
    4535 5nii:A (2.0) BS01 FAD ? GO:0000166 ... Q72C27 29033913
    4536 5nii:B (2.0) BS01 FAD ? GO:0000166 ... Q72C27 29033913
    4537 5nit:A (1.87) BS01 FAD 1.1.3.4 GO:0005576 ... P13006 29291138
    4538 5niw:A (1.8) BS01 FAD 1.1.3.4 GO:0005576 ... P13006 29291138
    4539 5nmw:A (1.89) BS01 FAD 1.-.-.- GO:0000166 ... L0N8S9 29717713
    4540 5nmw:B (1.89) BS01 FAD 1.-.-.- GO:0000166 ... L0N8S9 29717713
    4541 5nmw:C (1.89) BS01 FAD 1.-.-.- GO:0000166 ... L0N8S9 29717713
    4542 5nmw:D (1.89) BS01 FAD 1.-.-.- GO:0000166 ... L0N8S9 29717713
    4543 5nmx:A (1.6) BS01 FAD 1.-.-.- GO:0000166 ... L0N8S9 29717713
    4544 5nmx:B (1.6) BS01 FAD 1.-.-.- GO:0000166 ... L0N8S9 29717713
    4545 5nmx:C (1.6) BS01 FAD 1.-.-.- GO:0000166 ... L0N8S9 29717713
    4546 5nmx:D (1.6) BS01 FAD 1.-.-.- GO:0000166 ... L0N8S9 29717713
    4547 5o0x:A (2.2) BS01 FAD ? GO:0016020 ... K9WT99 28607049
    4548 5o86:A (1.687) BS01 FAD 4.1.99.3 GO:0000166 ... Q8PYK9 28858395
    4549 5o8d:A (2.0) BS01 FAD 4.1.99.3 GO:0000166 ... Q8PYK9 28858395
    4550 5o8e:A (1.7) BS01 FAD 4.1.99.3 GO:0000166 ... Q8PYK9 28858395
    4551 5o8p:B (2.75) BS01 FAD 1.14.13.59 GO:0000166 ... D4I246 29428557
    4552 5o8r:A (2.8) BS01 FAD 1.14.13.59 GO:0000166 ... D4I246 29428557
    4553 5o8r:B (2.8) BS01 FAD 1.14.13.59 GO:0000166 ... D4I246 29428557
    4554 5oc1:A (2.3) BS02 FAD 1.1.3.7 GO:0000166 ... O94219 29043303
    4555 5oc2:A (2.85) BS01 FAD ? GO:0000166 ... Q4WIF5 29445091
    4556 5oc2:B (2.85) BS01 FAD ? GO:0000166 ... Q4WIF5 29445091
    4557 5oc3:A (2.153) BS01 FAD ? GO:0000166 ... Q4WIF5 29445091
    4558 5oc3:B (2.153) BS01 FAD ? GO:0000166 ... Q4WIF5 29445091
    4559 5odc:A (2.3) BS01 FAD 1.8.-.- GO:0000166 ... A0A2D0TCB9 28818947
    4560 5odc:G (2.3) BS01 FAD 1.8.-.- GO:0000166 ... A0A2D0TCB9 28818947
    4561 5ode:A (2.196) BS01 FAD ? GO:0000166 ... Q7NCP4 29133410
    4562 5ode:A (2.196) BS02 FAD ? GO:0000166 ... Q7NCP4 29133410
    4563 5ode:B (2.196) BS01 FAD ? GO:0000166 ... Q7NCP4 29133410
    4564 5ode:B (2.196) BS02 FAD ? GO:0000166 ... Q7NCP4 29133410
    4565 5odh:A (2.2) BS07 FAD 1.8.-.- GO:0000166 ... A0A2D0TCB9 28818947
    4566 5odh:G (2.2) BS08 FAD 1.8.-.- GO:0000166 ... A0A2D0TCB9 28818947
    4567 5odi:A (2.4) BS01 FAD 1.8.-.- GO:0000166 ... A0A2D0TCB9 28818947
    4568 5odi:G (2.4) BS01 FAD 1.8.-.- GO:0000166 ... A0A2D0TCB9 28818947
    4569 5odq:A (2.15) BS01 FAD 1.8.-.- GO:0000166 ... A0A2D0TCB9 28818947
    4570 5odq:G (2.15) BS01 FAD 1.8.-.- GO:0000166 ... A0A2D0TCB9 28818947
    4571 5odr:A (2.2) BS01 FAD 1.8.-.- GO:0000166 ... A0A2D0TCB9 28818947
    4572 5odr:G (2.2) BS02 FAD 1.8.-.- GO:0000166 ... A0A2D0TCB9 28818947
    4573 5oel:A (2.2) BS01 FAD 1.1.98.3 GO:0003885 ... P9WJF1 28815830
    4574 5oel:B (2.2) BS01 FAD 1.1.98.3 GO:0003885 ... P9WJF1 28815830
    4575 5oep:A (2.35) BS01 FAD 1.1.98.3 GO:0003885 ... P9WJF1 28815830
    4576 5oep:B (2.35) BS01 FAD 1.1.98.3 GO:0003885 ... P9WJF1 28815830
    4577 5oeq:A (2.25) BS01 FAD 1.1.98.3 GO:0003885 ... P9WJF1 28815830
    4578 5oeq:B (2.25) BS01 FAD 1.1.98.3 GO:0003885 ... P9WJF1 28815830
    4579 5ogx:A (1.72) BS01 FAD ? GO:0000166 ... A0A076MZ01 29950589
    4580 5ol2:A (3.1) BS01 FAD ? GO:0000166 ... A0A125V455 29146947
    4581 5ol2:A (3.1) BS03 FAD ? GO:0000166 ... A0A125V455 29146947
    4582 5ol2:B (3.1) BS01 FAD ? GO:0000166 ... A0A125V3V6 29146947
    4583 5ol2:C (3.1) BS01 FAD 1.3.8.1 GO:0000166 ... A0A125V4E7 29146947
    4584 5ol2:C (3.1) BS04 FAD 1.3.8.1 GO:0000166 ... A0A125V4E7 29146947
    4585 5ol2:D (3.1) BS01 FAD ? GO:0000166 ... A0A125V455 29146947
    4586 5ol2:D (3.1) BS03 FAD ? GO:0000166 ... A0A125V455 29146947
    4587 5ol2:E (3.1) BS01 FAD ? GO:0000166 ... A0A125V3V6 29146947
    4588 5ol2:F (3.1) BS01 FAD 1.3.8.1 GO:0000166 ... A0A125V4E7 29146947
    4589 5ol2:F (3.1) BS02 FAD 1.3.8.1 GO:0000166 ... A0A125V4E7 29146947
    4590 5ol2:F (3.1) BS03 FAD 1.3.8.1 GO:0000166 ... A0A125V4E7 29146947
    4591 5ow0:A (1.7) BS01 FAD ? GO:0000166 ... Q39VG4 31405915
    4592 5ow0:B (1.7) BS02 FAD ? GO:0000166 ... Q39VG5 31405915
    4593 5s9s:A (1.8) BS01 FAD 1.8.1.12 GO:0000166 ... Q389T8 35860359
    4594 5s9s:B (1.8) BS01 FAD 1.8.1.12 GO:0000166 ... Q389T8 35860359
    4595 5s9t:A (1.66) BS01 FAD 1.8.1.12 GO:0000166 ... Q389T8 35860359
    4596 5s9t:B (1.66) BS01 FAD 1.8.1.12 GO:0000166 ... Q389T8 35860359
    4597 5s9u:A (1.73) BS01 FAD 1.8.1.12 GO:0000166 ... Q389T8 35860359
    4598 5s9u:B (1.73) BS01 FAD 1.8.1.12 GO:0000166 ... Q389T8 35860359
    4599 5s9v:A (1.9) BS01 FAD 1.8.1.12 GO:0000166 ... Q389T8 35860359
    4600 5s9v:B (1.9) BS01 FAD 1.8.1.12 GO:0000166 ... Q389T8 35860359

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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