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BioLiP
Download all results in tab-seperated text for 230 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 7nkg:E (1.6) BS02 F43 N/A GO:0015948 ... N/A 33919946
    202 7nkg:F (1.6) BS01 F43 N/A GO:0015948 ... N/A 33919946
    203 7nkg:G (1.6) BS04 F43 N/A GO:0015948 ... N/A 33919946
    204 7nkg:G (1.6) BS05 F43 N/A GO:0015948 ... N/A 33919946
    205 7nkg:H (1.6) BS03 F43 N/A GO:0015948 ... N/A 33919946
    206 7nkg:I (1.6) BS01 F43 N/A GO:0015948 ... N/A 33919946
    207 7nkg:J (1.6) BS03 F43 N/A GO:0015948 ... N/A 33919946
    208 7nkg:J (1.6) BS05 F43 N/A GO:0015948 ... N/A 33919946
    209 7nkg:K (1.6) BS02 F43 N/A GO:0015948 ... N/A 33919946
    210 7nkg:L (1.6) BS01 F43 N/A GO:0015948 ... N/A 33919946
    211 7suc:A (1.9) BS01 F43 2.8.4.1 GO:0005737 ... P11558 35202981
    212 7suc:A (1.9) BS05 F43 2.8.4.1 GO:0005737 ... P11558 35202981
    213 7suc:B (1.9) BS03 F43 2.8.4.1 GO:0005737 ... P11560 35202981
    214 7suc:C (1.9) BS02 F43 2.8.4.1 GO:0005737 ... P11562 35202981
    215 7suc:a (1.9) BS01 F43 2.8.4.1 GO:0005737 ... P11558 35202981
    216 7suc:a (1.9) BS04 F43 2.8.4.1 GO:0005737 ... P11558 35202981
    217 7suc:b (1.9) BS01 F43 2.8.4.1 GO:0005737 ... P11560 35202981
    218 7suc:c (1.9) BS01 F43 2.8.4.1 GO:0005737 ... P11562 35202981
    219 7sxm:A (2.503) BS01 F43 2.8.4.1 GO:0005737 ... P11558 35202981
    220 7sxm:A (2.503) BS04 F43 2.8.4.1 GO:0005737 ... P11558 35202981
    221 7sxm:B (2.503) BS03 F43 2.8.4.1 GO:0005737 ... P11560 35202981
    222 7sxm:C (2.503) BS02 F43 2.8.4.1 GO:0005737 ... P11562 35202981
    223 7sxm:D (2.503) BS01 F43 2.8.4.1 GO:0005737 ... P11558 35202981
    224 7sxm:D (2.503) BS03 F43 2.8.4.1 GO:0005737 ... P11558 35202981
    225 7sxm:E (2.503) BS01 F43 2.8.4.1 GO:0005737 ... P11560 35202981
    226 7sxm:F (2.503) BS01 F43 2.8.4.1 GO:0005737 ... P11562 35202981
    227 8gf5:A (3.0) BS02 F43 2.8.4.1 GO:0005737 ... Q8THH1 37307484
    228 8gf5:B (3.0) BS01 F43 2.8.4.1 GO:0005737 ... Q8THH1 37307484
    229 8gf5:C (3.0) BS02 F43 2.8.4.1 GO:0015948 ... Q8THG7 37307484
    230 8gf5:E (3.0) BS02 F43 2.8.4.1 GO:0015948 ... Q8THH0 37307484
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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