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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 230 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1e6v:A (2.7) BS01 F43 2.8.4.1 GO:0005737 ... Q49605 11023796
    2 1e6v:A (2.7) BS03 F43 2.8.4.1 GO:0005737 ... Q49605 11023796
    3 1e6v:B (2.7) BS02 F43 2.8.4.1 GO:0015948 ... Q49601 11023796
    4 1e6v:C (2.7) BS01 F43 2.8.4.1 GO:0015948 ... Q49604 11023796
    5 1e6v:D (2.7) BS01 F43 2.8.4.1 GO:0005737 ... Q49605 11023796
    6 1e6v:D (2.7) BS04 F43 2.8.4.1 GO:0005737 ... Q49605 11023796
    7 1e6v:E (2.7) BS01 F43 2.8.4.1 GO:0015948 ... Q49601 11023796
    8 1e6v:F (2.7) BS01 F43 2.8.4.1 GO:0015948 ... Q49604 11023796
    9 1e6y:A (1.6) BS01 F43 2.8.4.1 GO:0005737 ... P07962 11023796
    10 1e6y:A (1.6) BS04 F43 2.8.4.1 GO:0005737 ... P07962 11023796
    11 1e6y:B (1.6) BS03 F43 2.8.4.1 GO:0005737 ... P07955 11023796
    12 1e6y:C (1.6) BS01 F43 2.8.4.1 GO:0005737 ... P07964 11023796
    13 1e6y:D (1.6) BS01 F43 2.8.4.1 GO:0005737 ... P07962 11023796
    14 1e6y:D (1.6) BS03 F43 2.8.4.1 GO:0005737 ... P07962 11023796
    15 1e6y:E (1.6) BS01 F43 2.8.4.1 GO:0005737 ... P07955 11023796
    16 1e6y:F (1.6) BS01 F43 2.8.4.1 GO:0005737 ... P07964 11023796
    17 1hbm:A (1.8) BS01 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    18 1hbm:A (1.8) BS03 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    19 1hbm:B (1.8) BS01 F43 2.8.4.1 GO:0005737 ... P11560 11491299
    20 1hbm:C (1.8) BS01 F43 2.8.4.1 GO:0005737 ... P11562 11491299
    21 1hbm:D (1.8) BS01 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    22 1hbm:D (1.8) BS03 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    23 1hbm:E (1.8) BS01 F43 2.8.4.1 GO:0005737 ... P11560 11491299
    24 1hbm:F (1.8) BS01 F43 2.8.4.1 GO:0005737 ... P11562 11491299
    25 1hbn:A (1.16) BS01 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    26 1hbn:A (1.16) BS05 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    27 1hbn:B (1.16) BS01 F43 2.8.4.1 GO:0005737 ... P11560 11491299
    28 1hbn:C (1.16) BS01 F43 2.8.4.1 GO:0005737 ... P11562 11491299
    29 1hbn:D (1.16) BS01 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    30 1hbn:D (1.16) BS03 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    31 1hbn:E (1.16) BS01 F43 2.8.4.1 GO:0005737 ... P11560 11491299
    32 1hbn:F (1.16) BS01 F43 2.8.4.1 GO:0005737 ... P11562 11491299
    33 1hbo:A (1.78) BS01 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    34 1hbo:A (1.78) BS04 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    35 1hbo:B (1.78) BS01 F43 2.8.4.1 GO:0005737 ... P11560 11491299
    36 1hbo:C (1.78) BS01 F43 2.8.4.1 GO:0005737 ... P11562 11491299
    37 1hbo:D (1.78) BS01 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    38 1hbo:D (1.78) BS03 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    39 1hbo:E (1.78) BS01 F43 2.8.4.1 GO:0005737 ... P11560 11491299
    40 1hbo:F (1.78) BS01 F43 2.8.4.1 GO:0005737 ... P11562 11491299
    41 1hbu:A (1.9) BS01 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    42 1hbu:A (1.9) BS05 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    43 1hbu:B (1.9) BS01 F43 2.8.4.1 GO:0005737 ... P11560 11491299
    44 1hbu:C (1.9) BS01 F43 2.8.4.1 GO:0005737 ... P11562 11491299
    45 1hbu:D (1.9) BS01 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    46 1hbu:D (1.9) BS03 F43 2.8.4.1 GO:0005737 ... P11558 11491299
    47 1hbu:E (1.9) BS01 F43 2.8.4.1 GO:0005737 ... P11560 11491299
    48 1hbu:F (1.9) BS01 F43 2.8.4.1 GO:0005737 ... P11562 11491299
    49 1mro:A (1.16) BS01 F43 2.8.4.1 GO:0005737 ... P11558 9367957
    50 1mro:A (1.16) BS05 F43 2.8.4.1 GO:0005737 ... P11558 9367957
    51 1mro:B (1.16) BS03 F43 2.8.4.1 GO:0005737 ... P11560 9367957
    52 1mro:C (1.16) BS02 F43 2.8.4.1 GO:0005737 ... P11562 9367957
    53 1mro:D (1.16) BS01 F43 2.8.4.1 GO:0005737 ... P11558 9367957
    54 1mro:D (1.16) BS04 F43 2.8.4.1 GO:0005737 ... P11558 9367957
    55 1mro:E (1.16) BS01 F43 2.8.4.1 GO:0005737 ... P11560 9367957
    56 1mro:F (1.16) BS01 F43 2.8.4.1 GO:0005737 ... P11562 9367957
    57 3m1v:A (1.45) BS01 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    58 3m1v:A (1.45) BS04 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    59 3m1v:B (1.45) BS03 F43 2.8.4.1 GO:0005737 ... P11560 20707311
    60 3m1v:C (1.45) BS01 F43 2.8.4.1 GO:0005737 ... P11562 20707311
    61 3m1v:D (1.45) BS01 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    62 3m1v:D (1.45) BS03 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    63 3m1v:E (1.45) BS01 F43 2.8.4.1 GO:0005737 ... P11560 20707311
    64 3m1v:F (1.45) BS01 F43 2.8.4.1 GO:0005737 ... P11562 20707311
    65 3m2r:A (1.3) BS01 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    66 3m2r:A (1.3) BS05 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    67 3m2r:B (1.3) BS04 F43 2.8.4.1 GO:0005737 ... P11560 20707311
    68 3m2r:C (1.3) BS01 F43 2.8.4.1 GO:0005737 ... P11562 20707311
    69 3m2r:D (1.3) BS01 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    70 3m2r:D (1.3) BS04 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    71 3m2r:E (1.3) BS01 F43 2.8.4.1 GO:0005737 ... P11560 20707311
    72 3m2r:F (1.3) BS01 F43 2.8.4.1 GO:0005737 ... P11562 20707311
    73 3m2u:A (1.4) BS01 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    74 3m2u:A (1.4) BS05 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    75 3m2u:B (1.4) BS04 F43 2.8.4.1 GO:0005737 ... P11560 20707311
    76 3m2u:C (1.4) BS01 F43 2.8.4.1 GO:0005737 ... P11562 20707311
    77 3m2u:D (1.4) BS01 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    78 3m2u:D (1.4) BS04 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    79 3m2u:E (1.4) BS01 F43 2.8.4.1 GO:0005737 ... P11560 20707311
    80 3m2u:F (1.4) BS01 F43 2.8.4.1 GO:0005737 ... P11562 20707311
    81 3m2v:A (1.8) BS01 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    82 3m2v:A (1.8) BS05 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    83 3m2v:B (1.8) BS04 F43 2.8.4.1 GO:0005737 ... P11560 20707311
    84 3m2v:C (1.8) BS01 F43 2.8.4.1 GO:0005737 ... P11562 20707311
    85 3m2v:D (1.8) BS01 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    86 3m2v:D (1.8) BS04 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    87 3m2v:E (1.8) BS01 F43 2.8.4.1 GO:0005737 ... P11560 20707311
    88 3m2v:F (1.8) BS01 F43 2.8.4.1 GO:0005737 ... P11562 20707311
    89 3m30:A (1.45) BS01 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    90 3m30:A (1.45) BS05 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    91 3m30:B (1.45) BS04 F43 2.8.4.1 GO:0005737 ... P11560 20707311
    92 3m30:C (1.45) BS01 F43 2.8.4.1 GO:0005737 ... P11562 20707311
    93 3m30:D (1.45) BS01 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    94 3m30:D (1.45) BS04 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    95 3m30:E (1.45) BS01 F43 2.8.4.1 GO:0005737 ... P11560 20707311
    96 3m30:F (1.45) BS01 F43 2.8.4.1 GO:0005737 ... P11562 20707311
    97 3m32:A (1.35) BS02 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    98 3m32:A (1.35) BS05 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    99 3m32:B (1.35) BS03 F43 2.8.4.1 GO:0005737 ... P11560 20707311
    100 3m32:C (1.35) BS01 F43 2.8.4.1 GO:0005737 ... P11562 20707311
    101 3m32:D (1.35) BS02 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    102 3m32:D (1.35) BS04 F43 2.8.4.1 GO:0005737 ... P11558 20707311
    103 3m32:E (1.35) BS01 F43 2.8.4.1 GO:0005737 ... P11560 20707311
    104 3m32:F (1.35) BS01 F43 2.8.4.1 GO:0005737 ... P11562 20707311
    105 3pot:A (1.2) BS01 F43 2.8.4.1 GO:0005737 ... P11558 21438550
    106 3pot:A (1.2) BS05 F43 2.8.4.1 GO:0005737 ... P11558 21438550
    107 3pot:B (1.2) BS04 F43 2.8.4.1 GO:0005737 ... P11560 21438550
    108 3pot:C (1.2) BS01 F43 2.8.4.1 GO:0005737 ... P11562 21438550
    109 3pot:D (1.2) BS01 F43 2.8.4.1 GO:0005737 ... P11558 21438550
    110 3pot:D (1.2) BS04 F43 2.8.4.1 GO:0005737 ... P11558 21438550
    111 3pot:E (1.2) BS01 F43 2.8.4.1 GO:0005737 ... P11560 21438550
    112 3pot:F (1.2) BS01 F43 2.8.4.1 GO:0005737 ... P11562 21438550
    113 5a0y:A (1.1) BS01 F43 2.8.4.1 GO:0005737 ... P11558 27467699
    114 5a0y:A (1.1) BS05 F43 2.8.4.1 GO:0005737 ... P11558 27467699
    115 5a0y:B (1.1) BS03 F43 2.8.4.1 GO:0005737 ... P11560 27467699
    116 5a0y:C (1.1) BS01 F43 2.8.4.1 GO:0005737 ... P11562 27467699
    117 5a0y:D (1.1) BS01 F43 2.8.4.1 GO:0005737 ... P11558 27467699
    118 5a0y:D (1.1) BS03 F43 2.8.4.1 GO:0005737 ... P11558 27467699
    119 5a0y:E (1.1) BS01 F43 2.8.4.1 GO:0005737 ... P11560 27467699
    120 5a0y:F (1.1) BS01 F43 2.8.4.1 GO:0005737 ... P11562 27467699
    121 5a8k:A (1.41) BS06 F43 2.8.4.1 GO:0015948 ... H7CHY1 27467699
    122 5a8k:A (1.41) BS08 F43 2.8.4.1 GO:0015948 ... H7CHY1 27467699
    123 5a8k:B (1.41) BS03 F43 2.8.4.1 GO:0015948 ... A0A1C7D1E2 27467699
    124 5a8k:C (1.41) BS01 F43 2.8.4.1 GO:0015948 ... A0A1C7D1E3 27467699
    125 5a8k:D (1.41) BS02 F43 2.8.4.1 GO:0015948 ... H7CHY1 27467699
    126 5a8k:D (1.41) BS08 F43 2.8.4.1 GO:0015948 ... H7CHY1 27467699
    127 5a8k:E (1.41) BS03 F43 2.8.4.1 GO:0015948 ... A0A1C7D1E2 27467699
    128 5a8k:F (1.41) BS01 F43 2.8.4.1 GO:0015948 ... A0A1C7D1E3 27467699
    129 5a8r:A (2.15) BS03 F43 2.8.4.1 GO:0015948 ... P58815 27467699
    130 5a8r:A (2.15) BS05 F43 2.8.4.1 GO:0015948 ... P58815 27467699
    131 5a8r:B (2.15) BS03 F43 2.8.4.1 GO:0015948 ... D9PXZ6 27467699
    132 5a8r:C (2.15) BS01 F43 2.8.4.1 GO:0015948 ... P58816 27467699
    133 5a8r:D (2.15) BS02 F43 2.8.4.1 GO:0015948 ... P58815 27467699
    134 5a8r:D (2.15) BS05 F43 2.8.4.1 GO:0015948 ... P58815 27467699
    135 5a8r:E (2.15) BS02 F43 2.8.4.1 GO:0015948 ... D9PXZ6 27467699
    136 5a8r:F (2.15) BS01 F43 2.8.4.1 GO:0015948 ... P58816 27467699
    137 5a8r:G (2.15) BS03 F43 2.8.4.1 GO:0015948 ... P58815 27467699
    138 5a8r:G (2.15) BS05 F43 2.8.4.1 GO:0015948 ... P58815 27467699
    139 5a8r:H (2.15) BS03 F43 2.8.4.1 GO:0015948 ... D9PXZ6 27467699
    140 5a8r:I (2.15) BS02 F43 2.8.4.1 GO:0015948 ... P58816 27467699
    141 5a8r:J (2.15) BS02 F43 2.8.4.1 GO:0015948 ... P58815 27467699
    142 5a8r:J (2.15) BS05 F43 2.8.4.1 GO:0015948 ... P58815 27467699
    143 5a8r:K (2.15) BS03 F43 2.8.4.1 GO:0015948 ... D9PXZ6 27467699
    144 5a8r:L (2.15) BS01 F43 2.8.4.1 GO:0015948 ... P58816 27467699
    145 5a8w:A (1.8) BS04 F43 2.8.4.1 GO:0015948 ... H7CHY2 27467699
    146 5a8w:A (1.8) BS05 F43 2.8.4.1 GO:0015948 ... H7CHY2 27467699
    147 5a8w:B (1.8) BS03 F43 2.8.4.1 GO:0015948 ... A0A1C7D1E4 27467699
    148 5a8w:C (1.8) BS01 F43 2.8.4.1 GO:0015948 ... A0A1C7D1E5 27467699
    149 5a8w:D (1.8) BS03 F43 2.8.4.1 GO:0015948 ... H7CHY2 27467699
    150 5a8w:D (1.8) BS05 F43 2.8.4.1 GO:0015948 ... H7CHY2 27467699
    151 5a8w:E (1.8) BS02 F43 2.8.4.1 GO:0015948 ... A0A1C7D1E4 27467699
    152 5a8w:F (1.8) BS01 F43 2.8.4.1 GO:0015948 ... A0A1C7D1E5 27467699
    153 5a8w:G (1.8) BS02 F43 2.8.4.1 GO:0015948 ... H7CHY2 27467699
    154 5a8w:G (1.8) BS04 F43 2.8.4.1 GO:0015948 ... H7CHY2 27467699
    155 5a8w:H (1.8) BS02 F43 2.8.4.1 GO:0015948 ... A0A1C7D1E4 27467699
    156 5a8w:I (1.8) BS01 F43 2.8.4.1 GO:0015948 ... A0A1C7D1E5 27467699
    157 5a8w:J (1.8) BS01 F43 2.8.4.1 GO:0015948 ... H7CHY2 27467699
    158 5a8w:J (1.8) BS03 F43 2.8.4.1 GO:0015948 ... H7CHY2 27467699
    159 5a8w:K (1.8) BS02 F43 2.8.4.1 GO:0015948 ... A0A1C7D1E4 27467699
    160 5a8w:L (1.8) BS01 F43 2.8.4.1 GO:0015948 ... A0A1C7D1E5 27467699
    161 5g0r:A (1.25) BS01 F43 2.8.4.1 GO:0005737 ... P11558 27140643
    162 5g0r:A (1.25) BS04 F43 2.8.4.1 GO:0005737 ... P11558 27140643
    163 5g0r:B (1.25) BS02 F43 2.8.4.1 GO:0005737 ... P11560 27140643
    164 5g0r:C (1.25) BS01 F43 2.8.4.1 GO:0005737 ... P11562 27140643
    165 5g0r:D (1.25) BS01 F43 2.8.4.1 GO:0005737 ... P11558 27140643
    166 5g0r:D (1.25) BS03 F43 2.8.4.1 GO:0005737 ... P11558 27140643
    167 5g0r:E (1.25) BS01 F43 2.8.4.1 GO:0005737 ... P11560 27140643
    168 5g0r:F (1.25) BS01 F43 2.8.4.1 GO:0005737 ... P11562 27140643
    169 5n1q:A (1.9) BS02 F43 2.8.4.1 GO:0005737 ... A0A247D6X3 28559298
    170 5n1q:A (1.9) BS04 F43 2.8.4.1 GO:0005737 ... A0A247D6X3 28559298
    171 5n1q:B (1.9) BS03 F43 2.8.4.1 GO:0005737 ... A0A247D6X4 28559298
    172 5n1q:C (1.9) BS02 F43 2.8.4.1 GO:0005737 ... A0A247D6X5 28559298
    173 5n1q:D (1.9) BS02 F43 2.8.4.1 GO:0005737 ... A0A247D6X3 28559298
    174 5n1q:D (1.9) BS04 F43 2.8.4.1 GO:0005737 ... A0A247D6X3 28559298
    175 5n1q:E (1.9) BS01 F43 2.8.4.1 GO:0005737 ... A0A247D6X4 28559298
    176 5n1q:F (1.9) BS01 F43 2.8.4.1 GO:0005737 ... A0A247D6X5 28559298
    177 5n28:A (2.8) BS04 F43 2.8.4.1 GO:0015948 ... H1KXL5 28559298
    178 5n28:A (2.8) BS05 F43 2.8.4.1 GO:0015948 ... H1KXL5 28559298
    179 5n28:B (2.8) BS03 F43 2.8.4.1 GO:0015948 ... H1KXL9 28559298
    180 5n28:C (2.8) BS01 F43 2.8.4.1 GO:0015948 ... H1KXL6 28559298
    181 5n28:D (2.8) BS03 F43 2.8.4.1 GO:0015948 ... H1KXL5 28559298
    182 5n28:D (2.8) BS04 F43 2.8.4.1 GO:0015948 ... H1KXL5 28559298
    183 5n28:F (2.8) BS01 F43 2.8.4.1 GO:0015948 ... H1KXL6 28559298
    184 5n2a:A (2.8) BS03 F43 2.8.4.1 GO:0015948 ... H1KXL5 28559298
    185 5n2a:B (2.8) BS03 F43 2.8.4.1 GO:0015948 ... H1KXL9 28559298
    186 5n2a:C (2.8) BS01 F43 2.8.4.1 GO:0015948 ... H1KXL6 28559298
    187 7b2h:A (2.12) BS03 F43 2.8.4.1 GO:0005737 ... P11558 34210888
    188 7b2h:A (2.12) BS05 F43 2.8.4.1 GO:0005737 ... P11558 34210888
    189 7b2h:B (2.12) BS03 F43 2.8.4.1 GO:0005737 ... P11560 34210888
    190 7b2h:C (2.12) BS01 F43 2.8.4.1 GO:0005737 ... P11562 34210888
    191 7b2h:D (2.12) BS02 F43 2.8.4.1 GO:0005737 ... P11558 34210888
    192 7b2h:D (2.12) BS03 F43 2.8.4.1 GO:0005737 ... P11558 34210888
    193 7b2h:E (2.12) BS01 F43 2.8.4.1 GO:0005737 ... P11560 34210888
    194 7b2h:F (2.12) BS01 F43 2.8.4.1 GO:0005737 ... P11562 34210888
    195 7nkg:A (1.6) BS04 F43 N/A GO:0015948 ... N/A 33919946
    196 7nkg:A (1.6) BS05 F43 N/A GO:0015948 ... N/A 33919946
    197 7nkg:B (1.6) BS03 F43 N/A GO:0015948 ... N/A 33919946
    198 7nkg:C (1.6) BS01 F43 N/A GO:0015948 ... N/A 33919946
    199 7nkg:D (1.6) BS03 F43 N/A GO:0015948 ... N/A 33919946
    200 7nkg:D (1.6) BS05 F43 N/A GO:0015948 ... N/A 33919946

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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