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BioLiP
Download all results in tab-seperated text for 710 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 7utd:N (2.19) BS02 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    602 7utd:N (2.19) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    603 7utd:N (2.19) BS04 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    604 7utd:O (2.19) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    605 7utd:P (2.19) BS02 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    606 7utd:P (2.19) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    607 7utd:P (2.19) BS04 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    608 7uur:C (1.67) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    609 7uur:D (1.67) BS02 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    610 7uur:D (1.67) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    611 7uur:D (1.67) BS04 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    612 7uur:F (1.67) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    613 7uur:G (1.67) BS02 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    614 7uur:G (1.67) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    615 7uur:G (1.67) BS04 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    616 7uus:A (8.0) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    617 7uus:B (8.0) BS02 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    618 7uus:B (8.0) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    619 7uus:B (8.0) BS04 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    620 7uus:C (8.0) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    621 7uus:D (8.0) BS02 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    622 7uus:D (8.0) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    623 7uus:D (8.0) BS04 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    624 7uus:E (8.0) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    625 7uus:F (8.0) BS02 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    626 7uus:F (8.0) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    627 7uus:F (8.0) BS04 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    628 7uus:G (8.0) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    629 7uus:H (8.0) BS02 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    630 7uus:H (8.0) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    631 7uus:H (8.0) BS04 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    632 7uus:I (8.0) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    633 7uus:J (8.0) BS02 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    634 7uus:J (8.0) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    635 7uus:J (8.0) BS04 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    636 7uus:K (8.0) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    637 7uus:L (8.0) BS02 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    638 7uus:L (8.0) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    639 7uus:L (8.0) BS04 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    640 7uus:M (8.0) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    641 7uus:N (8.0) BS02 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    642 7uus:N (8.0) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    643 7uus:N (8.0) BS04 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    644 7uus:O (8.0) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    645 7uus:P (8.0) BS02 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    646 7uus:P (8.0) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    647 7uus:P (8.0) BS04 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    648 7vxq:A (1.77) BS04 F3S 1.12.99.6 GO:0005886 ... A0A3B6UEQ1 35102895
    649 7vxq:B (1.77) BS02 F3S 1.12.99.6 GO:0008901 ... A0A3B6UEQ0 35102895
    650 7vxq:C (1.77) BS04 F3S 1.12.99.6 GO:0005886 ... A0A3B6UEQ1 35102895
    651 7vxq:D (1.77) BS02 F3S 1.12.99.6 GO:0008901 ... A0A3B6UEQ0 35102895
    652 7w2j:A (3.6) BS02 F3S 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    653 7w2j:D (3.6) BS02 F3S 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    654 7wsq:A (3.8) BS02 F3S 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    655 7wsq:D (3.8) BS02 F3S 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    656 8amp:A (2.0) BS01 F3S ? GO:0046872 ... P71820 36699703
    657 8amq:A (1.6) BS01 F3S 1.14.-.- GO:0004497 ... O53937
    P9WPL3    		 36699703
    658 8b6g:CB (3.0) BS03 F3S 1.3.5.1 GO:0005743 ... I7M403 36949187
    659 8bqs:CB (2.9) BS03 F3S 1.3.5.1 GO:0005743 ... I7M403 N/A
    660 8ccq:A (1.89) BS03 F3S 1.20.98.1 GO:0016491 ... Q6VAL8 37442232
    661 8ccq:C (1.89) BS03 F3S 1.20.98.1 GO:0016491 ... Q6VAL8 37442232
    662 8ccq:E (1.89) BS03 F3S 1.20.98.1 GO:0016491 ... Q6VAL8 37442232
    663 8ccq:G (1.89) BS03 F3S 1.20.98.1 GO:0016491 ... Q6VAL8 37442232
    664 8cff:A (1.57) BS03 F3S 1.20.9.1 GO:0016491 ... Q7SIF4 37442232
    665 8cff:C (1.57) BS03 F3S 1.20.9.1 GO:0016491 ... Q7SIF4 37442232
    666 8cff:E (1.57) BS03 F3S 1.20.9.1 GO:0016491 ... Q7SIF4 37442232
    667 8cff:G (1.57) BS03 F3S 1.20.9.1 GO:0016491 ... Q7SIF4 37442232
    668 8cgs:A (1.84) BS03 F3S 1.20.9.1 GO:0016491 ... Q7SIF4 37442232
    669 8cgs:C (1.84) BS03 F3S 1.20.9.1 GO:0016491 ... Q7SIF4 37442232
    670 8cgs:E (1.84) BS03 F3S 1.20.9.1 GO:0016491 ... Q7SIF4 37442232
    671 8cgs:G (1.84) BS03 F3S 1.20.9.1 GO:0016491 ... Q7SIF4 37442232
    672 8ch9:A (1.43) BS03 F3S 1.20.9.1 GO:0016491 ... Q7SIF4 N/A
    673 8ch9:C (1.43) BS03 F3S 1.20.9.1 GO:0016491 ... Q7SIF4 N/A
    674 8ch9:E (1.43) BS03 F3S 1.20.9.1 GO:0016491 ... Q7SIF4 N/A
    675 8ch9:G (1.43) BS03 F3S 1.20.9.1 GO:0016491 ... Q7SIF4 N/A
    676 8dqv:A (1.52) BS04 F3S 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    677 8dqv:B (1.52) BS02 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    678 8dqv:B (1.52) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    679 8dqv:B (1.52) BS04 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    680 8dqv:C (1.52) BS04 F3S 1.12.99.6 GO:0008901 ... A0QUM7 36890228
    681 8dqv:D (1.52) BS02 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    682 8dqv:D (1.52) BS03 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    683 8dqv:D (1.52) BS04 F3S 1.12.99.6 GO:0008901 ... A0QUM6 36890228
    684 8ed4:A (2.25) BS03 F3S 1.20.98.1 GO:0016491 ... Q6VAL8 36995233
    685 8ed4:C (2.25) BS03 F3S 1.20.98.1 GO:0016491 ... Q6VAL8 36995233
    686 8ed4:E (2.25) BS03 F3S 1.20.98.1 GO:0016491 ... Q6VAL8 36995233
    687 8ed4:G (2.25) BS03 F3S 1.20.98.1 GO:0016491 ... Q6VAL8 36995233
    688 8grj:B (2.95) BS02 F3S ? GO:0000166 ... Q8GQE7 N/A
    689 8grj:D (2.95) BS02 F3S ? GO:0000166 ... Q8GQE7 N/A
    690 8gs8:B (2.86) BS03 F3S 1.3.5.1 GO:0005515 ... P21912 37098072
    691 8gym:SB (2.96) BS03 F3S 1.3.5.1 GO:0005743 ... I7M403 37248254
    692 8gym:sb (2.96) BS03 F3S 1.3.5.1 GO:0005743 ... I7M403 37248254
    693 8gzu:SB (4.18) BS03 F3S 1.3.5.1 GO:0005743 ... I7M403 37248254
    694 8gzu:sb (4.18) BS03 F3S 1.3.5.1 GO:0005743 ... I7M403 37248254
    695 8hdd:A (3.0) BS02 F3S 1.1.5.9 GO:0000166 ... Q8GQE7 36473944
    696 8jej:A (2.5) BS02 F3S 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    697 8jek:A (2.7) BS02 F3S 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    698 8k6j:A (2.77) BS02 F3S N/A GO:0005886 ... M1VMF7 N/A
    699 8k6k:A (2.4) BS02 F3S N/A GO:0005886 ... M1VMF7 N/A
    700 8k9e:B (3.33) BS06 F3S ? N/A A9WEV3 38299372
    701 8k9f:B (2.9) BS06 F3S ? N/A A9WEV3 38299372
    702 8pou:S (1.65) BS02 F3S 1.12.99.6 GO:0005515 ... P31892 37860641
    703 8pov:S (1.92) BS02 F3S 1.12.99.6 GO:0005515 ... P31892 37860641
    704 8pow:S (1.61) BS02 F3S 1.12.99.6 GO:0005515 ... P31892 37860641
    705 8pox:S (1.6) BS02 F3S N/A N/A P31892 37860641
    706 8poz:S (1.65) BS02 F3S N/A N/A P31892 37860641
    707 8w6x:S (1.04) BS03 F3S 1.12.2.1 GO:0009055 ... P21853 37712026
    708 8x2j:B (2.7) BS06 F3S ? N/A A9WEV3 38299372
    709 8xcm:A (3.08) BS02 F3S 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    710 8xcn:A (3.02) BS02 F3S 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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