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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 710 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 3ae5:B (3.41) BS03 F3S 1.3.5.1 GO:0005515 ... Q007T0 N/A
    202 3ae6:B (3.4) BS03 F3S 1.3.5.1 GO:0005515 ... Q007T0 N/A
    203 3ae7:B (3.62) BS03 F3S 1.3.5.1 GO:0005515 ... Q007T0 26198225
    204 3ae8:B (3.4) BS03 F3S 1.3.5.1 GO:0005515 ... Q007T0 N/A
    205 3ae9:B (3.31) BS03 F3S 1.3.5.1 GO:0005515 ... Q007T0 26198225
    206 3aea:B (3.39) BS03 F3S 1.3.5.1 GO:0005515 ... Q007T0 26198225
    207 3aeb:B (3.0) BS02 F3S 1.3.5.1 GO:0005515 ... Q007T0 N/A
    208 3aec:B (3.61) BS03 F3S 1.3.5.1 GO:0005515 ... Q007T0 N/A
    209 3aed:B (3.52) BS03 F3S 1.3.5.1 GO:0005515 ... Q007T0 N/A
    210 3aee:B (3.22) BS02 F3S 1.3.5.1 GO:0005515 ... Q007T0 N/A
    211 3aef:B (2.8) BS03 F3S 1.3.5.1 GO:0005515 ... Q007T0 N/A
    212 3aeg:B (3.27) BS03 F3S 1.3.5.1 GO:0005515 ... Q007T0 N/A
    213 3ayx:B (1.18) BS02 F3S 1.12.99.6 GO:0008901 ... F2Z6J5 22002607
    214 3ayx:D (1.18) BS02 F3S 1.12.99.6 GO:0008901 ... F2Z6J5 22002607
    215 3ayz:B (1.22) BS03 F3S 1.12.99.6 GO:0008901 ... F2Z6J5 22002607
    216 3ayz:D (1.22) BS03 F3S 1.12.99.6 GO:0008901 ... F2Z6J5 22002607
    217 3cir:B (3.65) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 18385138
    218 3cir:N (3.65) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 18385138
    219 3cur:A (2.4) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 18685111
    220 3cur:B (2.4) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 18685111
    221 3cur:C (2.4) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 18685111
    222 3cur:H (2.4) BS01 F3S 1.12.2.1 GO:0008901 ... P18188 18685111
    223 3cur:I (2.4) BS01 F3S 1.12.2.1 GO:0008901 ... P18188 18685111
    224 3cus:A (2.2) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 18685111
    225 3cus:B (2.2) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 18685111
    226 3cus:C (2.2) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 18685111
    227 3dnf:A (1.65) BS01 F3S 1.17.7.4 GO:0008299 ... O67625 19035630
    228 3dnf:B (1.65) BS01 F3S 1.17.7.4 GO:0008299 ... O67625 19035630
    229 3egw:B (1.9) BS01 F3S 1.7.5.1 GO:0005515 ... P11349 N/A
    230 3egw:B (1.9) BS04 F3S 1.7.5.1 GO:0005515 ... P11349 N/A
    231 3f7t:A (1.8) BS01 F3S 1.17.7.4 GO:0005829 ... P62623 19569147
    232 3f7t:B (1.8) BS01 F3S 1.17.7.4 GO:0005829 ... P62623 19569147
    233 3h3x:A (2.7) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 19580279
    234 3h3x:B (2.7) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 19580279
    235 3h3x:C (2.7) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 19580279
    236 3hkz:D (3.4) BS01 F3S 2.7.7.6 GO:0000428 ... P95989 18235446
    237 3hkz:O (3.4) BS01 F3S 2.7.7.6 GO:0000428 ... P95989 18235446
    238 3ir5:B (2.3) BS04 F3S 1.7.5.1 GO:0005515 ... P11349 20053990
    239 3ir6:B (2.8) BS04 F3S 1.7.5.1 GO:0005515 ... P11349 20053990
    240 3ir7:B (2.5) BS04 F3S 1.7.5.1 GO:0005515 ... P11349 20053990
    241 3kef:A (1.7) BS01 F3S 1.17.7.4 GO:0005829 ... P62623 20080550
    242 3kef:B (1.7) BS01 F3S 1.17.7.4 GO:0005829 ... P62623 20080550
    243 3kel:A (1.8) BS01 F3S 1.17.7.4 GO:0005829 ... P62623 20080550
    244 3kel:B (1.8) BS01 F3S 1.17.7.4 GO:0005829 ... P62623 20080550
    245 3kem:A (2.0) BS02 F3S 1.17.7.4 GO:0005829 ... P62623 20080550
    246 3kem:B (2.0) BS02 F3S 1.17.7.4 GO:0005829 ... P62623 20080550
    247 3myr:A (2.1) BS03 F3S 1.12.99.6 GO:0008901 ... D3RV29 20673834
    248 3myr:C (2.1) BS03 F3S 1.12.99.6 GO:0008901 ... D3RV29 20673834
    249 3myr:E (2.1) BS03 F3S 1.12.99.6 GO:0008901 ... D3RV29 20673834
    250 3myr:G (2.1) BS03 F3S 1.12.99.6 GO:0008901 ... D3RV29 20673834
    251 3p4p:B (2.8) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 21098488
    252 3p4p:N (2.8) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 21098488
    253 3p4q:B (3.35) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 21098488
    254 3p4q:N (3.35) BS03 F3S 1.3.5.1 GO:0005515 ... P0AC47 21098488
    255 3p4r:B (3.05) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 21098488
    256 3p4r:N (3.05) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 21098488
    257 3p4s:B (3.1) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 21098488
    258 3p4s:N (3.1) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 21098488
    259 3pni:A (2.8) BS01 F3S ? GO:0005506 ... P29603 21484348
    260 3pni:B (2.8) BS01 F3S ? GO:0005506 ... P29603 21484348
    261 3rgw:S (1.5) BS02 F3S 1.12.99.6 GO:0005515 ... P31892 22002606
    262 3sfd:B (2.61) BS03 F3S 1.3.5.1 GO:0005515 ... Q007T0 21822798
    263 3sfe:B (2.81) BS03 F3S 1.3.5.1 GO:0005515 ... Q007T0 21822798
    264 3szu:A (1.4) BS01 F3S 1.17.7.4 GO:0005829 ... P62623 22137895
    265 3szu:B (1.4) BS01 F3S 1.17.7.4 GO:0005829 ... P62623 22137895
    266 3t0f:A (1.9) BS01 F3S 1.17.7.4 GO:0005829 ... P62623 22137895
    267 3t0f:B (1.9) BS01 F3S 1.17.7.4 GO:0005829 ... P62623 22137895
    268 3t0g:A (2.1) BS01 F3S 1.17.7.4 GO:0005829 ... P62623 22137895
    269 3t0g:B (2.1) BS01 F3S 1.17.7.4 GO:0005829 ... P62623 22137895
    270 3uqy:S (1.47) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 22431599
    271 3uqy:T (1.47) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 22431599
    272 3usc:S (2.0) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 22431599
    273 3usc:T (2.0) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 22431599
    274 3use:S (1.67) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 22431599
    275 3use:T (1.67) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 22431599
    276 3utd:A (1.7) BS01 F3S 1.17.7.4 GO:0005829 ... P62623 22948824
    277 3utd:B (1.7) BS01 F3S 1.17.7.4 GO:0005829 ... P62623 22948824
    278 3vr8:B (2.81) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 22577165
    279 3vr8:F (2.81) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 22577165
    280 3vr9:B (3.01) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 N/A
    281 3vr9:F (3.01) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 N/A
    282 3vra:B (3.44) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 N/A
    283 3vra:F (3.44) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 N/A
    284 3vrb:B (2.91) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 22577165
    285 3vrb:F (2.91) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 22577165
    286 4aay:A (2.7) BS03 F3S 1.20.98.1 GO:0016491 ... Q6VAL8 24023621
    287 4aay:C (2.7) BS03 F3S 1.20.98.1 GO:0016491 ... Q6VAL8 24023621
    288 4aay:E (2.7) BS03 F3S 1.20.98.1 GO:0016491 ... Q6VAL8 24023621
    289 4aay:G (2.7) BS03 F3S 1.20.98.1 GO:0016491 ... Q6VAL8 24023621
    290 4c3o:B (3.2) BS02 F3S 1.12.99.6 GO:0008901 ... Q8ZPG9 24428762
    291 4c3o:D (3.2) BS02 F3S 1.12.99.6 GO:0008901 ... Q8ZPG9 24428762
    292 4c3o:F (3.2) BS03 F3S 1.12.99.6 GO:0008901 ... Q8ZPG9 24428762
    293 4id8:A (2.15) BS01 F3S ? GO:0046872 ... Q2ITY5 24816113
    294 4iub:S (1.61) BS02 F3S 1.12.99.6 GO:0005515 ... P31892 24705592
    295 4iuc:S (1.45) BS02 F3S 1.12.99.6 GO:0005515 ... P31892 24705592
    296 4iud:S (1.45) BS02 F3S 1.12.99.6 GO:0005515 ... P31892 24705592
    297 4jye:A (1.65) BS07 F3S 1.8.-.- GO:0003824 ... Q9X0Z6 23596207
    298 4kx6:B (2.95) BS02 F3S N/A GO:0006099 ... N/A 23836905
    299 4kx6:N (2.95) BS02 F3S N/A GO:0006099 ... N/A 23836905
    300 4muy:A (1.8) BS01 F3S N/A GO:0019288 ... N/A 24813236
    301 4muy:B (1.8) BS01 F3S N/A GO:0019288 ... N/A 24813236
    302 4mv0:A (1.9) BS01 F3S N/A GO:0019288 ... N/A 24813236
    303 4mv0:B (1.9) BS01 F3S N/A GO:0019288 ... N/A 24813236
    304 4mv5:A (1.9) BS01 F3S N/A GO:0019288 ... N/A 24813236
    305 4mv5:B (1.9) BS01 F3S N/A GO:0019288 ... N/A 24813236
    306 4n7b:A (2.198) BS01 F3S 1.17.7.4 GO:0005515 ... Q8I295 24188825
    307 4ov1:A (2.306) BS01 F3S ? GO:0046872 ... Q2ITY5 24816113
    308 4s3d:A (1.8) BS01 F3S 1.17.7.3 GO:0005506 ... Q5SLI8 25868383
    309 4ttt:S (1.72) BS02 F3S 1.12.99.6 GO:0005515 ... P31892 N/A
    310 4u9h:S (0.89) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 25624102
    311 4u9i:S (1.06) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 25624102
    312 4ucq:A (2.6) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25666617
    313 4ucq:B (2.6) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25666617
    314 4ucq:C (2.6) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25666617
    315 4ucw:A (2.3) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25666617
    316 4ucw:B (2.3) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25666617
    317 4ucw:C (2.3) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25666617
    318 4ucw:S (2.3) BS01 F3S 1.12.2.1 GO:0008901 ... P18188 25666617
    319 4ucx:A (1.95) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25666617
    320 4ucx:B (1.95) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25666617
    321 4ucx:C (1.95) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25666617
    322 4ud2:A (2.3) BS02 F3S 1.12.2.1 GO:0008901 ... E1K248 25780984
    323 4ud2:B (2.3) BS02 F3S 1.12.2.1 GO:0008901 ... E1K248 25780984
    324 4ud2:C (2.3) BS02 F3S 1.12.2.1 GO:0008901 ... E1K248 25780984
    325 4ud6:A (2.12) BS02 F3S 1.12.2.1 GO:0008901 ... E1K248 25780984
    326 4ud6:B (2.12) BS02 F3S 1.12.2.1 GO:0008901 ... E1K248 25780984
    327 4ud6:C (2.12) BS02 F3S 1.12.2.1 GO:0008901 ... E1K248 25780984
    328 4ud6:R (2.12) BS01 F3S 1.12.2.1 GO:0008901 ... E1K247 25780984
    329 4ue2:A (2.02) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25780984
    330 4ue2:B (2.02) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25780984
    331 4ue2:C (2.02) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25780984
    332 4ue2:Q (2.02) BS01 F3S 1.12.2.1 GO:0008901 ... P18188 25780984
    333 4ue2:R (2.02) BS01 F3S 1.12.2.1 GO:0008901 ... P18188 25780984
    334 4ue3:SSS (1.4) BS02 F3S 1.12.99.6 GO:0008901 ... P69739 26619250
    335 4ue3:TTT (1.4) BS02 F3S 1.12.99.6 GO:0008901 ... P69739 26619250
    336 4ue6:A (2.3) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25780984
    337 4ue6:B (2.3) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25780984
    338 4ue6:C (2.3) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25780984
    339 4ue6:R (2.3) BS01 F3S 1.12.2.1 GO:0008901 ... P18188 25780984
    340 4ueq:A (1.7) BS02 F3S 1.12.2.1 GO:0008901 ... E1K248 25780984
    341 4ueq:B (1.7) BS02 F3S 1.12.2.1 GO:0008901 ... E1K248 25780984
    342 4ueq:C (1.7) BS02 F3S 1.12.2.1 GO:0008901 ... E1K248 25780984
    343 4ueq:D (1.7) BS02 F3S 1.12.2.1 GO:0008901 ... E1K248 25780984
    344 4ueq:E (1.7) BS02 F3S 1.12.2.1 GO:0008901 ... E1K248 25780984
    345 4ueq:F (1.7) BS02 F3S 1.12.2.1 GO:0008901 ... E1K248 25780984
    346 4ueq:Q (1.7) BS01 F3S 1.12.2.1 GO:0008901 ... E1K247 25780984
    347 4uew:A (2.08) BS02 F3S 1.12.2.1 GO:0008901 ... E1K248 25780984
    348 4uew:B (2.08) BS02 F3S 1.12.2.1 GO:0008901 ... E1K248 25780984
    349 4uew:C (2.08) BS02 F3S 1.12.2.1 GO:0008901 ... E1K248 25780984
    350 4uew:S (2.08) BS01 F3S 1.12.2.1 GO:0008901 ... E1K247 25780984
    351 4upe:A (1.8) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25315838
    352 4upe:B (1.8) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25315838
    353 4upe:C (1.8) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25315838
    354 4upv:A (1.52) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25315838
    355 4upv:B (1.52) BS03 F3S 1.12.2.1 GO:0008901 ... P18187 25315838
    356 4uql:A (1.22) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25315838
    357 4uql:B (1.22) BS03 F3S 1.12.2.1 GO:0008901 ... P18187 25315838
    358 4uqp:A (1.42) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25315838
    359 4uqp:B (1.42) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25315838
    360 4urh:A (1.44) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25315838
    361 4urh:B (1.44) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25315838
    362 4urh:C (1.44) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 25315838
    363 4ydd:B (1.86) BS01 F3S ? GO:0009055 ... G8QM54 26940877
    364 4ydd:D (1.86) BS01 F3S ? GO:0009055 ... G8QM54 26940877
    365 4ydd:F (1.86) BS01 F3S ? GO:0009055 ... G8QM54 26940877
    366 4ysx:B (2.25) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 26198225
    367 4ysx:F (2.25) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 26198225
    368 4ysy:B (3.1) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 26198225
    369 4ysy:F (3.1) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 26198225
    370 4ysz:B (3.3) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 26198225
    371 4ysz:F (3.3) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 26198225
    372 4yt0:B (3.66) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 26198225
    373 4yt0:F (3.66) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 26198225
    374 4ytm:B (3.4) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 26198225
    375 4ytm:F (3.4) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 26198225
    376 4ytn:B (3.0) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 N/A
    377 4ytn:F (3.0) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 N/A
    378 4ytp:B (3.1) BS03 F3S 1.3.5.1 GO:0005515 ... Q007T0 26198225
    379 4yxd:B (3.0) BS03 F3S 1.3.5.1 GO:0005515 ... Q007T0 26198225
    380 5a4f:S (1.25) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 26619250
    381 5a4f:T (1.25) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 26619250
    382 5a4i:S (1.23) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 26619250
    383 5a4i:T (1.23) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 26619250
    384 5a4m:S (1.7) BS02 F3S 1.12.99.6 GO:0008901 ... P69739 26619250
    385 5a4m:T (1.7) BS02 F3S 1.12.99.6 GO:0008901 ... P69739 26619250
    386 5acn:A (2.1) BS01 F3S 4.2.1.3 GO:0003994 ... P16276 2726740
    387 5adu:S (1.1) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 26619250
    388 5adu:T (1.1) BS02 F3S 1.12.99.6 GO:0005515 ... P69739 26619250
    389 5c2t:B (2.75) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 26198225
    390 5c2t:F (2.75) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 26198225
    391 5c3j:B (2.8) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 N/A
    392 5c3j:F (2.8) BS03 F3S 1.3.5.1 GO:0005515 ... O44074 N/A
    393 5ch7:B (2.2) BS01 F3S ? GO:0009055 ... G8QM54 26940877
    394 5ch7:D (2.2) BS01 F3S ? GO:0009055 ... G8QM54 26940877
    395 5ch7:F (2.2) BS01 F3S ? GO:0009055 ... G8QM54 26940877
    396 5chc:B (2.38) BS01 F3S ? GO:0009055 ... G8QM54 26940877
    397 5chc:D (2.38) BS01 F3S ? GO:0009055 ... G8QM54 26940877
    398 5chc:F (2.38) BS01 F3S ? GO:0009055 ... G8QM54 26940877
    399 5d51:S (1.47) BS02 F3S 1.12.99.6 GO:0005515 ... P31892 26913499
    400 5e7o:B (2.4) BS01 F3S ? GO:0009055 ... G8QM54 26940877
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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