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BioLiP
Download all results in tab-seperated text for 710 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a6l:A (2.1) BS02 F3S ? GO:0003677 ... P00214 9837955
    2 1axq:A (2.1) BS02 F3S ? GO:0003677 ... P00214 N/A
    3 1b0t:A (2.1) BS02 F3S ? GO:0003677 ... P00214 N/A
    4 1b0v:A (2.8) BS02 F3S ? GO:0003677 ... P00214 10593945
    5 1b0v:B (2.8) BS02 F3S ? GO:0003677 ... P00214 10593945
    6 1b0v:C (2.8) BS02 F3S ? GO:0003677 ... P00214 10593945
    7 1b0v:D (2.8) BS02 F3S ? GO:0003677 ... P00214 10593945
    8 1bc6:A (-1.00) BS01 F3S ? GO:0009055 ... Q45560 9657695
    9 1bd6:A (-1.00) BS01 F3S ? GO:0009055 ... Q45560 9657695
    10 1d3w:A (1.7) BS02 F3S ? GO:0003677 ... P00214 10866206
    11 1e3d:A (1.8) BS01 F3S 1.12.2.1 GO:0008901 ... Q9L869 11191224
    12 1e3d:C (1.8) BS01 F3S 1.12.2.1 GO:0008901 ... Q9L869 11191224
    13 1e7p:B (3.1) BS02 F3S 1.3.5.1 GO:0005886 ... P17596 11248702
    14 1e7p:E (3.1) BS02 F3S 1.3.5.1 GO:0005886 ... P17596 11248702
    15 1e7p:H (3.1) BS02 F3S 1.3.5.1 GO:0005886 ... P17596 11248702
    16 1e7p:K (3.1) BS02 F3S 1.3.5.1 GO:0005886 ... P17596 11248702
    17 1ea0:A (3.0) BS04 F3S 1.4.1.13 GO:0004355 ... Q05755 11188694
    18 1ea0:B (3.0) BS04 F3S 1.4.1.13 GO:0004355 ... Q05755 11188694
    19 1f2g:A (-1.00) BS01 F3S ? GO:0005506 ... P00209 10555576
    20 1f5b:A (1.62) BS01 F3S ? GO:0003677 ... P00214 11875515
    21 1f5c:A (1.75) BS01 F3S ? GO:0003677 ... P00214 11875515
    22 1fd2:A (1.9) BS02 F3S ? GO:0003677 ... P00214 2153958
    23 1fda:A (2.1) BS02 F3S ? GO:0003677 ... P00214 8245025
    24 1fdb:A (2.2) BS02 F3S ? GO:0003677 ... P00214 8245025
    25 1fdd:A (1.9) BS02 F3S ? GO:0003677 ... P00214 8245026
    26 1fer:A (2.3) BS01 F3S ? GO:0003677 ... P00214 15299532
    27 1ff2:A (2.3) BS02 F3S ? GO:0003677 ... P00214 10961993
    28 1frf:S (2.7) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 9751716
    29 1frh:A (2.3) BS02 F3S ? GO:0003677 ... P00214 8132582
    30 1fri:A (2.1) BS02 F3S ? GO:0003677 ... P00214 8132582
    31 1frj:A (2.3) BS02 F3S ? GO:0003677 ... P00214 8132582
    32 1frk:A (2.1) BS02 F3S ? GO:0003677 ... P00214 8132582
    33 1frl:A (2.3) BS02 F3S ? GO:0003677 ... P00214 8132582
    34 1frm:A (2.3) BS02 F3S ? GO:0003677 ... P00214 8132582
    35 1frv:A (2.85) BS02 F3S 1.12.2.1 GO:0008901 ... P12943 7854413
    36 1frv:C (2.85) BS02 F3S 1.12.2.1 GO:0008901 ... P12943 7854413
    37 1frx:A (2.5) BS02 F3S ? GO:0003677 ... P00214 7479727
    38 1ftc:A (2.35) BS02 F3S ? GO:0003677 ... P00214 9188450
    39 1ftc:B (2.35) BS02 F3S ? GO:0003677 ... P00214 9188450
    40 1fxd:A (1.7) BS01 F3S ? GO:0005506 ... P00209 2056535
    41 1g3o:A (1.65) BS02 F3S ? GO:0003677 ... P00214 11704670
    42 1g6b:A (1.9) BS02 F3S ? GO:0003677 ... P00214 11704670
    43 1g8j:A (2.03) BS03 F3S 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    44 1g8j:C (2.03) BS03 F3S 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    45 1g8k:A (1.64) BS04 F3S 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    46 1g8k:C (1.64) BS04 F3S 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    47 1g8k:E (1.64) BS04 F3S 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    48 1g8k:G (1.64) BS04 F3S 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    49 1gao:A (2.2) BS02 F3S ? GO:0003677 ... P00214 11704670
    50 1gao:B (2.2) BS02 F3S ? GO:0003677 ... P00214 11704670
    51 1gao:C (2.2) BS02 F3S ? GO:0003677 ... P00214 11704670
    52 1gao:D (2.2) BS02 F3S ? GO:0003677 ... P00214 11704670
    53 1h2a:S (1.8) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 9438867
    54 1h2r:S (1.4) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 10378274
    55 1h98:A (1.64) BS02 F3S ? GO:0009055 ... P03942 11681700
    56 1kf6:B (2.7) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 11850430
    57 1kf6:N (2.7) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 11850430
    58 1kfy:B (3.6) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 11850430
    59 1kfy:N (3.6) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 11850430
    60 1l0v:B (3.3) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 11850430
    61 1l0v:N (3.3) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 11850430
    62 1l5j:A (2.4) BS01 F3S 4.2.1.3
    4.2.1.99    		 GO:0003723 ... P36683 11992126
    63 1l5j:B (2.4) BS01 F3S 4.2.1.3
    4.2.1.99    		 GO:0003723 ... P36683 11992126
    64 1llw:A (2.7) BS02 F3S 1.4.7.1 GO:0006537 ... P55038 11967268
    65 1llz:A (3.0) BS02 F3S 1.4.7.1 GO:0006537 ... P55038 11967268
    66 1lm1:A (2.8) BS02 F3S 1.4.7.1 GO:0006537 ... P55038 11967268
    67 1nek:B (2.6) BS04 F3S 1.3.5.1 GO:0005515 ... P07014 12560550
    68 1nen:B (2.9) BS04 F3S 1.3.5.1 GO:0005515 ... P07014 12560550
    69 1ofd:A (2.0) BS02 F3S 1.4.7.1 GO:0006537 ... P55038 12818206
    70 1ofd:B (2.0) BS02 F3S 1.4.7.1 GO:0006537 ... P55038 12818206
    71 1ofe:A (2.45) BS02 F3S 1.4.7.1 GO:0006537 ... P55038 12818206
    72 1ofe:B (2.45) BS02 F3S 1.4.7.1 GO:0006537 ... P55038 12818206
    73 1pc4:A (1.65) BS02 F3S ? GO:0003677 ... P00214 12962482
    74 1pc5:A (1.8) BS02 F3S ? GO:0003677 ... P00214 12962482
    75 1q16:B (1.9) BS04 F3S 1.7.5.1 GO:0005515 ... P11349 12910261
    76 1qlb:B (2.33) BS02 F3S 1.3.5.1 GO:0005886 ... P17596 10586875
    77 1qlb:E (2.33) BS02 F3S 1.3.5.1 GO:0005886 ... P17596 10586875
    78 1r27:B (2.0) BS01 F3S 1.7.5.1 GO:0005515 ... P11349 14725769
    79 1r27:D (2.0) BS01 F3S 1.7.5.1 GO:0005515 ... P11349 14725769
    80 1siw:B (2.2) BS04 F3S 1.7.5.1 GO:0005515 ... P11349 15122898
    81 1siz:A (2.25) BS01 F3S ? GO:0005506 ... P29603 15122884
    82 1siz:C (2.25) BS01 F3S ? GO:0005506 ... P29603 15122884
    83 1sj1:A (1.5) BS01 F3S ? GO:0005506 ... P29603 15122884
    84 1sj1:B (1.5) BS01 F3S ? GO:0005506 ... P29603 15122884
    85 1ubh:S (1.35) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 12296727
    86 1ubj:S (1.35) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 12296727
    87 1ubk:S (1.18) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 12296727
    88 1ubl:S (1.2) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 12296727
    89 1ubm:S (1.4) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 12296727
    90 1ubo:S (1.35) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 12296727
    91 1ubr:S (1.34) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 12296727
    92 1ubt:S (1.34) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 12296727
    93 1ubu:S (1.35) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 12296727
    94 1wtf:A (1.6) BS02 F3S ? GO:0005506 ... P10245 16156653
    95 1wtf:B (1.6) BS01 F3S ? GO:0005506 ... P10245 16156653
    96 1wtf:C (1.6) BS01 F3S ? GO:0005506 ... P10245 16156653
    97 1wtf:D (1.6) BS01 F3S ? GO:0005506 ... P10245 16156653
    98 1wuh:S (1.24) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 N/A
    99 1wui:S (1.04) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 16271886
    100 1wuj:S (1.4) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 16271886
    101 1wuk:S (1.1) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 16271886
    102 1wul:S (1.5) BS03 F3S 1.12.2.1 GO:0008901 ... P21853 16271886
    103 1xer:A (2.0) BS02 F3S ? GO:0008270 ... P55907 8836097
    104 1xer:A (2.0) BS03 F3S ? GO:0008270 ... P55907 8836097
    105 1y4z:B (2.0) BS02 F3S 1.7.5.1 GO:0005515 ... P11349 15615728
    106 1y4z:B (2.0) BS04 F3S 1.7.5.1 GO:0005515 ... P11349 15615728
    107 1y5i:B (1.9) BS04 F3S 1.7.5.1 GO:0005515 ... P11349 15615728
    108 1y5l:B (2.5) BS04 F3S 1.7.5.1 GO:0005515 ... P11349 15615728
    109 1y5n:B (2.5) BS04 F3S 1.7.5.1 GO:0005515 ... P11349 15615728
    110 1yq3:B (2.2) BS03 F3S 1.3.5.1 GO:0006099 ... Q9YHT2 16371358
    111 1yq4:B (2.33) BS03 F3S 1.3.5.1 GO:0006099 ... Q9YHT2 16371358
    112 1yq9:A (2.35) BS02 F3S 1.12.2.1 GO:0008901 ... P12943 15803334
    113 1yq9:B (2.35) BS02 F3S 1.12.2.1 GO:0008901 ... P12943 15803334
    114 1yqw:A (1.83) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 15803334
    115 1yqw:B (1.83) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 15803334
    116 1yqw:C (1.83) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 15803334
    117 1yrq:A (2.1) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 15803334
    118 1yrq:B (2.1) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 15803334
    119 1yrq:C (2.1) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 15803334
    120 1yrq:D (2.1) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 15803334
    121 1yrq:F (2.1) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 15803334
    122 1yrq:G (2.1) BS02 F3S 1.12.2.1 GO:0008901 ... P18187 15803334
    123 1yrq:H (2.1) BS01 F3S 1.12.2.1 GO:0008901 ... P18188 15803334
    124 1zoy:B (2.4) BS03 F3S 1.3.5.1 GO:0005515 ... Q007T0 15989954
    125 1zp0:B (3.5) BS03 F3S 1.3.5.1 GO:0005515 ... Q007T0 15989954
    126 2acz:B (3.1) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 16407191
    127 2b76:B (3.3) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 16484232
    128 2b76:N (3.3) BS02 F3S 1.3.5.1 GO:0005515 ... P0AC47 16484232
    129 2bs2:B (1.78) BS02 F3S 1.3.5.1 GO:0005886 ... P17596 17024183
    130 2bs2:E (1.78) BS02 F3S 1.3.5.1 GO:0005886 ... P17596 17024183
    131 2bs3:B (2.19) BS02 F3S 1.3.5.1 GO:0005886 ... P17596 16380425
    132 2bs3:E (2.19) BS02 F3S 1.3.5.1 GO:0005886 ... P17596 16380425
    133 2bs4:B (2.76) BS01 F3S 1.3.5.1 GO:0005886 ... P17596 16380425
    134 2bs4:E (2.76) BS02 F3S 1.3.5.1 GO:0005886 ... P17596 16380425
    135 2fbw:B (2.06) BS03 F3S 1.3.5.1 GO:0006099 ... Q9YHT2 16371358
    136 2fbw:O (2.06) BS03 F3S 1.3.5.1 GO:0006099 ... Q9YHT2 16371358
    137 2fd2:A (1.9) BS02 F3S ? GO:0003677 ... P00214 1939185
    138 2frv:A (2.54) BS02 F3S 1.12.2.1 GO:0008901 ... P12943 N/A
    139 2frv:C (2.54) BS02 F3S 1.12.2.1 GO:0008901 ... P12943 N/A
    140 2frv:E (2.54) BS02 F3S 1.12.2.1 GO:0008901 ... P12943 N/A
    141 2frv:G (2.54) BS02 F3S 1.12.2.1 GO:0008901 ... P12943 N/A
    142 2frv:I (2.54) BS02 F3S 1.12.2.1 GO:0008901 ... P12943 N/A
    143 2frv:S (2.54) BS02 F3S 1.12.2.1 GO:0008901 ... P12943 N/A
    144 2h88:B (1.74) BS03 F3S 1.3.5.1 GO:0006099 ... Q9YHT2 16935256
    145 2h88:O (1.74) BS03 F3S 1.3.5.1 GO:0006099 ... Q9YHT2 16935256
    146 2h89:B (2.4) BS03 F3S 1.3.5.1 GO:0006099 ... Q9YHT2 16935256
    147 2ivf:B (1.88) BS01 F3S 1.17.99.2 GO:0009055 ... Q5P5I1 16962969
    148 2pa8:D (1.76) BS01 F3S 2.7.7.6 GO:0000428 ... P95989 18235446
    149 2pmz:D (3.4) BS01 F3S 2.7.7.6 GO:0000428 ... P95989 18235446
    150 2pmz:S (3.4) BS01 F3S 2.7.7.6 GO:0000428 ... P95989 18235446
    151 2v2k:A (1.6) BS01 F3S ? GO:0009055 ... P00215 17577575
    152 2v2k:A (1.6) BS02 F3S ? GO:0009055 ... P00215 17577575
    153 2v2k:B (1.6) BS01 F3S ? GO:0009055 ... P00215 17577575
    154 2v2k:B (1.6) BS02 F3S ? GO:0009055 ... P00215 17577575
    155 2vdc:A (9.5) BS04 F3S 1.4.1.13 GO:0004355 ... Q05755 18199747
    156 2vdc:B (9.5) BS04 F3S 1.4.1.13 GO:0004355 ... Q05755 18199747
    157 2vdc:C (9.5) BS04 F3S 1.4.1.13 GO:0004355 ... Q05755 18199747
    158 2vdc:D (9.5) BS04 F3S 1.4.1.13 GO:0004355 ... Q05755 18199747
    159 2vdc:E (9.5) BS04 F3S 1.4.1.13 GO:0004355 ... Q05755 18199747
    160 2vdc:F (9.5) BS04 F3S 1.4.1.13 GO:0004355 ... Q05755 18199747
    161 2vkr:A (2.01) BS01 F3S ? GO:0008270 ... P49949 18258200
    162 2vkr:B (2.01) BS01 F3S ? GO:0008270 ... P49949 18258200
    163 2vkr:C (2.01) BS01 F3S ? GO:0008270 ... P49949 18258200
    164 2vkr:D (2.01) BS01 F3S ? GO:0008270 ... P49949 18258200
    165 2vkr:E (2.01) BS01 F3S ? GO:0008270 ... P49949 18258200
    166 2vkr:F (2.01) BS01 F3S ? GO:0008270 ... P49949 18258200
    167 2vkr:G (2.01) BS01 F3S ? GO:0008270 ... P49949 18258200
    168 2waq:D (3.35) BS01 F3S 2.7.7.6 GO:0000428 ... B8YB56 19419240
    169 2wb1:D (3.52) BS01 F3S 2.7.7.6 GO:0000428 ... B8YB56 19419240
    170 2wb1:S (3.52) BS01 F3S 2.7.7.6 GO:0000428 ... B8YB56 19419240
    171 2wdq:B (2.4) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 19710024
    172 2wdq:F (2.4) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 19710024
    173 2wdq:J (2.4) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 19710024
    174 2wdr:B (3.2) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 19710024
    175 2wdr:F (3.2) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 19710024
    176 2wdr:J (3.2) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 19710024
    177 2wdv:B (3.2) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 19710024
    178 2wdv:F (3.2) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 19710024
    179 2wdv:J (3.2) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 19710024
    180 2wp9:B (2.7) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 21310949
    181 2wp9:F (2.7) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 21310949
    182 2wp9:J (2.7) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 21310949
    183 2wqy:B (2.1) BS03 F3S 1.3.5.1 GO:0006099 ... Q9YHT2 N/A
    184 2wqy:O (2.1) BS03 F3S 1.3.5.1 GO:0006099 ... Q9YHT2 N/A
    185 2ws3:B (3.2) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 N/A
    186 2ws3:F (3.2) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 N/A
    187 2ws3:J (3.2) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 N/A
    188 2wu2:B (2.5) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 N/A
    189 2wu2:F (2.5) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 N/A
    190 2wu2:J (2.5) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 N/A
    191 2wu5:B (2.803) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 N/A
    192 2wu5:F (2.803) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 N/A
    193 2wu5:J (2.803) BS03 F3S 1.3.5.1 GO:0005515 ... P07014 N/A
    194 2y0s:D (3.8) BS01 F3S 2.7.7.6 GO:0000428 ... B8YB56 21265742
    195 2y0s:S (3.8) BS01 F3S 2.7.7.6 GO:0000428 ... B8YB56 21265742
    196 3abv:B (3.24) BS04 F3S 1.3.5.1 GO:0005515 ... Q007T0 26198225
    197 3ae1:B (3.139) BS03 F3S 1.3.5.1 GO:0005515 ... Q007T0 N/A
    198 3ae2:B (3.1) BS03 F3S 1.3.5.1 GO:0005515 ... Q007T0 N/A
    199 3ae3:B (3.35) BS03 F3S 1.3.5.1 GO:0005515 ... Q007T0 N/A
    200 3ae4:B (2.91) BS03 F3S 1.3.5.1 GO:0005515 ... Q007T0 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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