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BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1bs3:A (1.55) BS02 F 1.15.1.1 GO:0004784 ... P80293 10231372
    2 1bs3:B (1.55) BS02 F 1.15.1.1 GO:0004784 ... P80293 10231372
    3 1t5g:A (2.4) BS01 F 3.5.3.1 GO:0000050 ... P07824 15248756
    4 1t5g:B (2.4) BS01 F 3.5.3.1 GO:0000050 ... P07824 15248756
    5 1t5g:C (2.4) BS01 F 3.5.3.1 GO:0000050 ... P07824 15248756
    6 2akz:A (1.36) BS03 F 4.2.1.11 GO:0000015 ... P09104 16411755
    7 2akz:B (1.36) BS03 F 4.2.1.11 GO:0000015 ... P09104 16411755
    8 2au6:A (1.2) BS04 F 3.6.1.1 GO:0000287 ... P0A7A9 17196979
    9 2au9:A (1.3) BS03 F 3.6.1.1 GO:0000287 ... P0A7A9 17196979
    10 2auu:A (1.22) BS03 F 3.6.1.1 GO:0000287 ... P0A7A9 17196979
    11 2haw:A (1.75) BS04 F 3.6.1.1 GO:0004427 ... P37487 17095506
    12 2haw:B (1.75) BS04 F 3.6.1.1 GO:0004427 ... P37487 17095506
    13 2qfp:C (2.2) BS04 F 3.1.3.2 GO:0003993 ... P80366 18234116
    14 2wvg:A (1.75) BS01 F 4.1.1.1 GO:0000287 ... P06672 20099870
    15 2wvg:B (1.75) BS02 F 4.1.1.1 GO:0000287 ... P06672 20099870
    16 2wvg:E (1.75) BS01 F 4.1.1.1 GO:0000287 ... P06672 20099870
    17 2wvg:F (1.75) BS03 F 4.1.1.1 GO:0000287 ... P06672 20099870
    18 2xmc:A (2.4) BS02 F 3.1.1.8 GO:0001540 ... P06276 21091433
    19 3ppm:A (1.78) BS02 F 3.1.1.-
    3.5.1.99    		 GO:0000139 ... P97612 21355555
    20 3ppm:B (1.78) BS02 F 3.1.1.-
    3.5.1.99    		 GO:0000139 ... P97612 21355555
    21 4cex:C (1.589) BS03 F 3.5.1.5 GO:0005737 ... P41020 25113581
    22 4cex:C (1.589) BS04 F 3.5.1.5 GO:0005737 ... P41020 25113581
    23 4kjq:A (2.875) BS01 F ? GO:0005247 ... P37019 24036509
    24 4kjq:B (2.875) BS01 F ? GO:0005247 ... P37019 24036509
    25 4kk8:A (2.86) BS01 F ? GO:0005247 ... P37019 24036509
    26 4kk8:B (2.86) BS01 F ? GO:0005247 ... P37019 24036509
    27 4kkl:A (2.85) BS01 F ? GO:0005247 ... P37019 24036509
    28 4kkl:A (2.85) BS02 F ? GO:0005247 ... P37019 24036509
    29 4kkl:B (2.85) BS01 F ? GO:0005247 ... P37019 24036509
    30 4kkl:B (2.85) BS02 F ? GO:0005247 ... P37019 24036509
    31 5a43:A (2.58) BS02 F ? GO:0005886 ... B7LI20 26344196
    32 5a43:B (2.58) BS01 F ? GO:0005886 ... B7LI20 26344196
    33 5kbn:A (2.48) BS04 F ? GO:0005886 ... Q6J5N4 27449280
    34 5kbn:B (2.48) BS02 F ? GO:0005886 ... Q6J5N4 27449280
    35 5nkq:A (2.17) BS01 F ? GO:0005886 ... Q7VYU0 26344196
    36 5nkq:B (2.17) BS01 F ? GO:0005886 ... Q7VYU0 26344196
    37 5nkq:B (2.17) BS02 F ? GO:0005886 ... Q7VYU0 26344196
    38 5nkq:C (2.17) BS01 F ? GO:0005886 ... Q7VYU0 26344196
    39 5nkq:C (2.17) BS02 F ? GO:0005886 ... Q7VYU0 26344196
    40 5vej:A (1.301) BS03 F ? GO:0008270 ... Q93LD7 28673485
    41 5xd5:B (1.75) BS05 F 3.6.1.58
    3.6.1.61
    3.6.1.69    		 GO:0006260 ... A0QUZ2 28705712
    42 6b2d:B (3.01) BS02 F ? GO:0005886 ... Q6J5N4 28952925
    43 6bqo:A (2.8) BS01 F ? GO:0005886 ... Q7VYU0 29526432
    44 6bqo:B (2.8) BS01 F ? GO:0005886 ... Q7VYU0 29526432
    45 6bx4:B (2.55) BS01 F ? GO:0005886 ... Q6J5N4 29393634
    46 6bx4:B (2.55) BS02 F ? GO:0005886 ... Q6J5N4 29393634
    47 6bx5:A (3.0) BS01 F ? GO:0005886 ... Q6J5N4 29393634
    48 6bx5:B (3.0) BS01 F ? GO:0005886 ... Q6J5N4 29393634
    49 6d0j:A (3.0) BS05 F N/A GO:0005247 ... N/A 29941917
    50 6d0j:B (3.0) BS06 F N/A GO:0005247 ... N/A 29941917
    51 6d0k:A (3.35) BS05 F N/A GO:0005247 ... N/A 29941917
    52 6d0k:B (3.35) BS06 F N/A GO:0005247 ... N/A 29941917
    53 6d0n:B (3.12) BS06 F N/A GO:0005247 ... N/A 29941917
    54 6qdy:C (1.416) BS03 F 3.5.1.5 GO:0005737 ... P41020 30969470
    55 6ri4:A (1.08) BS05 F 1.10.3.2 GO:0005507 ... I1VE66 31478903
    56 6ri6:A (0.93) BS05 F 1.10.3.2 GO:0005507 ... I1VE66 31478903
    57 6ri8:A (0.95) BS05 F 1.10.3.2 GO:0005507 ... I1VE66 31478903
    58 6rii:A (0.97) BS05 F 1.10.3.2 GO:0005507 ... I1VE66 31478903
    59 6rik:A (1.2) BS05 F 1.10.3.2 GO:0005507 ... I1VE66 31478903
    60 6ril:A (1.34) BS05 F 1.10.3.2 GO:0005507 ... I1VE66 31478903
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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