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BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6cfd:A (2.57) BS01 EZA 3.4.21.92 GO:0004176 ... Q3XX76 29784838 PDBbind: -logKd/Ki=7.86, Kd=13.9nM
    2 6cfd:B (2.57) BS01 EZA 3.4.21.92 GO:0004176 ... Q3XX76 29784838 PDBbind: -logKd/Ki=7.86, Kd=13.9nM
    3 6cfd:C (2.57) BS01 EZA 3.4.21.92 GO:0004176 ... Q3XX76 29784838
    4 6cfd:D (2.57) BS01 EZA 3.4.21.92 GO:0004176 ... Q3XX76 29784838
    5 6cfd:D (2.57) BS02 EZA 3.4.21.92 GO:0004176 ... Q3XX76 29784838
    6 6cfd:E (2.57) BS01 EZA 3.4.21.92 GO:0004176 ... Q3XX76 29784838
    7 6cfd:E (2.57) BS02 EZA 3.4.21.92 GO:0004176 ... Q3XX76 29784838
    8 6cfd:F (2.57) BS01 EZA 3.4.21.92 GO:0004176 ... Q3XX76 29784838
    9 6cfd:F (2.57) BS02 EZA 3.4.21.92 GO:0004176 ... Q3XX76 29784838
    10 6cfd:G (2.57) BS01 EZA 3.4.21.92 GO:0004176 ... Q3XX76 29784838
    11 6cfd:I (2.57) BS01 EZA 3.4.21.92 GO:0004176 ... Q3XX76 29784838
    12 6cfd:I (2.57) BS02 EZA 3.4.21.92 GO:0004176 ... Q3XX76 29784838
    13 6cfd:K (2.57) BS01 EZA 3.4.21.92 GO:0004176 ... Q3XX76 29784838
    14 6cfd:L (2.57) BS01 EZA 3.4.21.92 GO:0004176 ... Q3XX76 29784838
    15 6cfd:M (2.57) BS01 EZA 3.4.21.92 GO:0004176 ... Q3XX76 29784838
    16 6cfd:M (2.57) BS02 EZA 3.4.21.92 GO:0004176 ... Q3XX76 29784838
    17 6cfd:N (2.57) BS01 EZA 3.4.21.92 GO:0004176 ... Q3XX76 29784838
    18 6cfd:N (2.57) BS02 EZA 3.4.21.92 GO:0004176 ... Q3XX76 29784838
    19 6cfd:S (2.57) BS01 EZA 3.4.21.92 GO:0004176 ... Q3XX76 29784838
    20 6cfd:S (2.57) BS02 EZA 3.4.21.92 GO:0004176 ... Q3XX76 29784838
    21 6cfd:T (2.57) BS01 EZA 3.4.21.92 GO:0004176 ... Q3XX76 29784838
    22 6cfd:T (2.57) BS02 EZA 3.4.21.92 GO:0004176 ... Q3XX76 29784838
    23 7dfu:A (1.901) BS01 EZA 3.4.21.92 GO:0004176 ... Q5H434 34218658
    24 7dfu:A (1.901) BS02 EZA 3.4.21.92 GO:0004176 ... Q5H434 34218658
    25 7dfu:B (1.901) BS01 EZA 3.4.21.92 GO:0004176 ... Q5H434 34218658
    26 7dfu:B (1.901) BS02 EZA 3.4.21.92 GO:0004176 ... Q5H434 34218658
    27 7dfu:C (1.901) BS01 EZA 3.4.21.92 GO:0004176 ... Q5H434 34218658
    28 7dfu:C (1.901) BS02 EZA 3.4.21.92 GO:0004176 ... Q5H434 34218658
    29 7dfu:D (1.901) BS01 EZA 3.4.21.92 GO:0004176 ... Q5H434 34218658
    30 7dfu:D (1.901) BS02 EZA 3.4.21.92 GO:0004176 ... Q5H434 34218658
    31 7dfu:E (1.901) BS01 EZA 3.4.21.92 GO:0004176 ... Q5H434 34218658
    32 7dfu:E (1.901) BS02 EZA 3.4.21.92 GO:0004176 ... Q5H434 34218658
    33 7dfu:F (1.901) BS01 EZA 3.4.21.92 GO:0004176 ... Q5H434 34218658
    34 7dfu:F (1.901) BS02 EZA 3.4.21.92 GO:0004176 ... Q5H434 34218658
    35 7dfu:G (1.901) BS01 EZA 3.4.21.92 GO:0004176 ... Q5H434 34218658
    36 7dfu:G (1.901) BS02 EZA 3.4.21.92 GO:0004176 ... Q5H434 34218658
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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