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BioLiP
Download all results in tab-seperated text for 63 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1cqs:A (1.9) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 10653633
    2 1cqs:B (1.9) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 10653633
    3 1gs3:A (2.1) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 N/A
    4 1ogx:A (2.0) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 11007792 MOAD: Kd=0.81uM
    5 1ogx:B (2.0) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 11007792 MOAD: Kd=0.81uM
    6 1ogz:A (2.3) BS01 EQU 5.3.3.1 GO:0004769 ... P00947 12852789 MOAD: Kd=1.4uM
    PDBbind: -logKd/Ki=5.85, Kd=1.4uM
    7 1oh0:A (1.1) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 9369474
    8 1oh0:B (1.1) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 9369474
    9 1oho:A (1.9) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 N/A
    10 1qjg:A (2.3) BS01 EQU 5.3.3.1 GO:0004769 ... P00947 10551849
    11 1qjg:B (2.3) BS01 EQU 5.3.3.1 GO:0004769 ... P00947 10551849
    12 1qjg:C (2.3) BS01 EQU 5.3.3.1 GO:0004769 ... P00947 10551849
    13 1qjg:D (2.3) BS01 EQU 5.3.3.1 GO:0004769 ... P00947 10551849
    14 1qjg:E (2.3) BS01 EQU 5.3.3.1 GO:0004769 ... P00947 10551849
    15 1qjg:F (2.3) BS01 EQU 5.3.3.1 GO:0004769 ... P00947 10551849
    16 1w6y:A (2.1) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 15819891 MOAD: Kd=4.4uM
    PDBbind: -logKd/Ki=5.36, Kd=4.4uM
    17 3fzw:A (1.32) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 19469568
    18 3fzw:B (1.32) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 19469568
    19 3ipt:A (1.632) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 20080683
    20 3ipt:B (1.632) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 20080683
    21 3ipt:C (1.632) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 20080683
    22 3ipt:D (1.632) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 20080683
    23 3m8c:B (2.1) BS01 EQU 5.3.3.1 GO:0004769 ... P00947 N/A
    24 3m8c:B (2.1) BS02 EQU 5.3.3.1 GO:0004769 ... P00947 N/A
    25 3m8c:C (2.1) BS01 EQU 5.3.3.1 GO:0004769 ... P00947 N/A
    26 3m8c:D (2.1) BS01 EQU 5.3.3.1 GO:0004769 ... P00947 N/A
    27 3m8c:D (2.1) BS02 EQU 5.3.3.1 GO:0004769 ... P00947 N/A
    28 3myt:A (1.961) BS01 EQU 5.3.3.1 GO:0004769 ... P00947 N/A
    29 3myt:C (1.961) BS01 EQU 5.3.3.1 GO:0004769 ... P00947 N/A
    30 3ov4:A (1.83) BS01 EQU 5.3.3.1 GO:0004769 ... P00947 N/A
    31 3ov4:B (1.83) BS01 EQU 5.3.3.1 GO:0004769 ... P00947 N/A
    32 3ov4:C (1.83) BS01 EQU 5.3.3.1 GO:0004769 ... P00947 N/A
    33 3ows:A (1.71) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 23798390
    34 3ows:B (1.71) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 23798390
    35 3ows:C (1.71) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 23798390
    36 3ows:D (1.71) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 23798390
    37 3owu:A (1.7) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 22308339
    38 3owu:B (1.7) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 22308339
    39 3owu:C (1.7) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 22308339
    40 3owu:D (1.7) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 22308339
    41 3owy:A (2.3) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 22308339
    42 3owy:B (2.3) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 22308339
    43 3owy:C (2.3) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 22308339
    44 3owy:D (2.3) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 22308339
    45 3owy:E (2.3) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 22308339
    46 3owy:H (2.3) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 22308339
    47 5ai1:A (2.103) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 25947291 MOAD: Kd=0.34uM
    PDBbind: -logKd/Ki=6.47, Kd=0.34uM
    48 5g2g:A (1.599) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 27375051 MOAD: Kd=0.9uM
    PDBbind: -logKd/Ki=6.05, Kd=0.9uM
    49 5g2g:B (1.599) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 27375051 MOAD: Kd=0.9uM
    50 5kp1:A (1.218) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 27545569
    51 5kp1:B (1.218) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 27545569
    52 5kp1:C (1.218) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 27545569
    53 5kp1:D (1.218) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 27545569
    54 5kp3:A (1.7) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 27545569
    55 5kp3:B (1.7) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 27545569
    56 5ugi:A (1.8) BS01 EQU 5.3.3.1 GO:0004769 ... P00947 28719738
    57 6u4i:A (1.55) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 33376217
    58 6u4i:B (1.55) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 33376217
    59 6uae:A (1.93) BS02 EQU 5.3.3.1 GO:0004769 ... P00947 N/A
    60 6uae:B (1.93) BS01 EQU 5.3.3.1 GO:0004769 ... P00947 N/A
    61 6uae:C (1.93) BS02 EQU 5.3.3.1 GO:0004769 ... P00947 N/A
    62 6ucn:A (1.32) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 33376217
    63 6ucn:B (1.32) BS01 EQU 5.3.3.1 GO:0004769 ... P07445 33376217
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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