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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5oy0:L (2.501) BS04 EQ3 ? GO:0005886 ... P37277 29414678
    2 5tuw:A (2.302) BS01 EQ3 ? GO:0005515 ... P74102 28559328
    3 5tuw:B (2.302) BS01 EQ3 ? GO:0005515 ... P74102 28559328
    4 5tuw:C (2.302) BS01 EQ3 ? GO:0005515 ... P74102 28559328
    5 5tuw:D (2.302) BS01 EQ3 ? GO:0005515 ... P74102 28559328
    6 5tuw:E (2.302) BS01 EQ3 ? GO:0005515 ... P74102 28559328
    7 5tuw:F (2.302) BS01 EQ3 ? GO:0005515 ... P74102 28559328
    8 5tv0:A (1.648) BS01 EQ3 ? GO:0005515 ... P74102 28559328
    9 5ui2:A (2.1) BS02 EQ3 ? GO:0009579 ... P83689 12517340
    10 5ui2:B (2.1) BS01 EQ3 ? GO:0009579 ... P83689 12517340
    11 8asl:l (3.15) BS03 EQ3 ? GO:0005886 ... P37277 37542031
    12 8asp:l (2.9) BS04 EQ3 ? GO:0005886 ... P37277 37542031
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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