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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1igx:A (3.1) BS03 EPA 1.14.99.1 GO:0001516 ... P05979 11477109
    2 3gwx:A (2.4) BS01 EPA ? GO:0003677 ... Q03181 10198642 MOAD: ic50=4uM
    PDBbind: -logKd/Ki=5.40, IC50=4.0uM
    BindingDB: IC50=4000nM
    3 3gwx:B (2.4) BS01 EPA ? GO:0003677 ... Q03181 10198642 MOAD: ic50=4uM
    BindingDB: IC50=4000nM
    4 3hs6:A (2.4) BS01 EPA 1.14.99.1 GO:0001516 ... Q05769 20463020
    5 3hs6:B (2.4) BS01 EPA 1.14.99.1 GO:0001516 ... Q05769 20463020
    6 5m0o:A (1.8) BS02 EPA ? GO:0004497 ... E9NSU2 28053093
    7 5m0o:C (1.8) BS02 EPA ? GO:0004497 ... E9NSU2 28053093
    8 6lxa:A (1.23) BS02 EPA ? GO:0003677 ... Q07869 33205029 BindingDB: IC50=1100nM
    9 7bq4:A (1.62) BS02 EPA ? GO:0003677 ... Q07869 33205029 BindingDB: IC50=1100nM
    10 7wom:A (0.9) BS01 EPA ? GO:0005515 ... P05413 N/A
    11 8id9:R (3.0) BS01 EPA ? GO:0001818 ... Q5NUL3 36862765
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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