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BioLiP
Download all results in tab-seperated text for 118 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1igz:A (2.9) BS03 EIC 1.14.99.1 GO:0001516 ... P05979 11477109
    2 2evl:A (2.2) BS03 EIC ? GO:0005515 ... Q9NZD2 17105344 PDBbind: -logKd/Ki=6.70, Kd=0.2uM
    3 2q9s:A (2.3) BS01 EIC ? GO:0005324 ... P04117 17761196
    4 4dq4:A (2.1) BS01 EIC ? GO:0005515 ... P02754 23500663
    5 4ia6:A (1.8) BS01 EIC ? GO:0006631 ... Q5FL96 23519674
    6 4lkt:A (2.57) BS01 EIC ? GO:0001972 ... Q01469 24692551 PDBbind: -logKd/Ki=5.90, Ki=1.26uM
    BindingDB: Ki=1.26e+3nM
    7 4lkt:B (2.57) BS01 EIC ? GO:0001972 ... Q01469 24692551 BindingDB: Ki=1.26e+3nM
    8 4lkt:C (2.57) BS01 EIC ? GO:0001972 ... Q01469 24692551 BindingDB: Ki=1.26e+3nM
    9 4lkt:D (2.57) BS01 EIC ? GO:0001972 ... Q01469 24692551 BindingDB: Ki=1.26e+3nM
    10 4nyq:A (1.2) BS01 EIC ? N/A Q6SVB6 27437115
    11 5bvs:A (2.2) BS01 EIC ? GO:0005324 ... A0A0K0MJN3 26206084
    12 5bvs:B (2.2) BS01 EIC ? GO:0005324 ... A0A0K0MJN3 26206084
    13 5z0b:A (2.17) BS01 EIC ? GO:0003677 ... P02768 N/A
    14 5z0b:B (2.17) BS01 EIC ? GO:0003677 ... P02768 N/A
    15 5z0b:C (2.17) BS01 EIC ? GO:0003677 ... P02768 N/A
    16 6cng:A (1.47) BS01 EIC ? GO:0008289 ... Q8DQI6 N/A
    17 6cng:D (1.47) BS01 EIC ? GO:0008289 ... Q8DQI6 N/A
    18 6ogh:A (1.85) BS02 EIC ? GO:0005549 ... Q1HRL7 32094450
    19 6zb4:A (3.03) BS01 EIC ? GO:0016020 ... P0DTC2 32958580
    20 6zb4:B (3.03) BS01 EIC ? GO:0016020 ... P0DTC2 32958580
    21 6zb4:C (3.03) BS01 EIC ? GO:0016020 ... P0DTC2 32958580
    22 6zb5:A (2.85) BS01 EIC ? GO:0016020 ... P0DTC2 32958580
    23 6zb5:B (2.85) BS01 EIC ? GO:0016020 ... P0DTC2 32958580
    24 6zb5:C (2.85) BS01 EIC ? GO:0016020 ... P0DTC2 32958580
    25 6zp2:A (3.1) BS02 EIC ? GO:0005515 ... P0DTC2 32737467
    26 6zp2:B (3.1) BS02 EIC ? GO:0005515 ... P0DTC2 32737467
    27 6zp2:C (3.1) BS01 EIC ? GO:0005515 ... P0DTC2 32737467
    28 7cn8:A (2.5) BS01 EIC ? GO:0016020 ... A0A6G6A2Q2 33707453
    29 7cn8:B (2.5) BS01 EIC ? GO:0016020 ... A0A6G6A2Q2 33707453
    30 7cn8:C (2.5) BS01 EIC ? GO:0016020 ... A0A6G6A2Q2 33707453
    31 7dwy:A (2.7) BS01 EIC ? GO:0016020 ... P0DTC2 33737693
    32 7dwy:B (2.7) BS01 EIC ? GO:0016020 ... P0DTC2 33737693
    33 7dwy:C (2.7) BS01 EIC ? GO:0016020 ... P0DTC2 33737693
    34 7jji:A (3.6) BS02 EIC ? GO:0016020 ... P0DTC2 33082295
    35 7jji:A (3.6) BS03 EIC ? GO:0016020 ... P0DTC2 33082295
    36 7jji:B (3.6) BS01 EIC ? GO:0016020 ... P0DTC2 33082295
    37 7jji:B (3.6) BS03 EIC ? GO:0016020 ... P0DTC2 33082295
    38 7jji:C (3.6) BS01 EIC ? GO:0016020 ... P0DTC2 33082295
    39 7jji:C (3.6) BS02 EIC ? GO:0016020 ... P0DTC2 33082295
    40 7od3:A (2.8) BS01 EIC ? GO:0016020 ... P0DTC2 35017512
    41 7od3:B (2.8) BS01 EIC ? GO:0016020 ... P0DTC2 35017512
    42 7od3:C (2.8) BS01 EIC ? GO:0016020 ... P0DTC2 35017512
    43 7odl:A (3.03) BS01 EIC ? GO:0016020 ... P0DTC2 35017512
    44 7odl:B (3.03) BS01 EIC ? GO:0016020 ... P0DTC2 35017512
    45 7odl:C (3.03) BS01 EIC ? GO:0016020 ... P0DTC2 35017512
    46 7qur:A (2.27) BS03 EIC ? GO:0016020 ... P0DTC2 35737812
    47 7qur:B (2.27) BS01 EIC ? GO:0016020 ... P0DTC2 35737812
    48 7qur:C (2.27) BS01 EIC ? GO:0016020 ... P0DTC2 35737812
    49 7qus:A (2.39) BS01 EIC ? GO:0016020 ... P0DTC2
    P10104    		 35737812
    50 7qus:A (2.39) BS02 EIC ? GO:0016020 ... P0DTC2
    P10104    		 35737812
    51 7qus:B (2.39) BS01 EIC ? GO:0016020 ... P0DTC2
    P10104    		 35737812
    52 7qus:C (2.39) BS01 EIC ? GO:0016020 ... P0DTC2
    P10104    		 35737812
    53 7wdj:A (0.9) BS01 EIC ? GO:0005515 ... P05413 N/A
    54 7wgv:A (3.2) BS01 EIC ? GO:0005515 ... P0DTC2 N/A
    55 7wgv:B (3.2) BS01 EIC ? GO:0005515 ... P0DTC2 N/A
    56 7wgv:C (3.2) BS01 EIC ? GO:0005515 ... P0DTC2 N/A
    57 7x08:A (2.7) BS01 EIC ? GO:0016020 ... P0DTC2 35169121
    58 7x08:A (2.7) BS02 EIC ? GO:0016020 ... P0DTC2 35169121
    59 7x08:B (2.7) BS01 EIC ? GO:0016020 ... P0DTC2 35169121
    60 7x08:C (2.7) BS01 EIC ? GO:0016020 ... P0DTC2 35169121
    61 7xtz:A (2.8) BS02 EIC ? GO:0016020 ... P0DTC2 35905112
    62 7xtz:A (2.8) BS03 EIC ? GO:0016020 ... P0DTC2 35905112
    63 7xtz:B (2.8) BS01 EIC ? GO:0016020 ... P0DTC2 35905112
    64 7xtz:B (2.8) BS03 EIC ? GO:0016020 ... P0DTC2 35905112
    65 7xtz:C (2.8) BS01 EIC ? GO:0016020 ... P0DTC2 35905112
    66 7xtz:C (2.8) BS02 EIC ? GO:0016020 ... P0DTC2 35905112
    67 7xu0:A (2.9) BS01 EIC ? GO:0016020 ... P0DTC2 35905112
    68 7xu0:A (2.9) BS03 EIC ? GO:0016020 ... P0DTC2 35905112
    69 7xu0:B (2.9) BS01 EIC ? GO:0016020 ... P0DTC2 35905112
    70 7xu0:C (2.9) BS01 EIC ? GO:0016020 ... P0DTC2 35905112
    71 7xu1:A (3.0) BS01 EIC ? GO:0005515 ... P0DTC2 35905112
    72 7xu1:A (3.0) BS02 EIC ? GO:0005515 ... P0DTC2 35905112
    73 7xu1:B (3.0) BS01 EIC ? GO:0005515 ... P0DTC2 35905112
    74 7xu1:C (3.0) BS02 EIC ? GO:0005515 ... P0DTC2 35905112
    75 7xu1:C (3.0) BS03 EIC ? GO:0005515 ... P0DTC2 35905112
    76 7xu2:A (3.2) BS02 EIC ? GO:0016020 ... P0DTC2 35905112
    77 7xu2:B (3.2) BS01 EIC ? GO:0016020 ... P0DTC2 35905112
    78 7xu2:C (3.2) BS01 EIC ? GO:0016020 ... P0DTC2 35905112
    79 7xu4:A (3.2) BS02 EIC ? GO:0016020 ... P0DTC2 35905112
    80 7xu4:A (3.2) BS03 EIC ? GO:0016020 ... P0DTC2 35905112
    81 7xu4:B (3.2) BS01 EIC ? GO:0016020 ... P0DTC2 35905112
    82 7xu4:B (3.2) BS02 EIC ? GO:0016020 ... P0DTC2 35905112
    83 7xu4:C (3.2) BS01 EIC ? GO:0016020 ... P0DTC2 35905112
    84 7xu4:C (3.2) BS03 EIC ? GO:0016020 ... P0DTC2 35905112
    85 7zh1:A (2.48) BS01 EIC ? GO:0005515 ... P10104
    P59594    		 36417532
    86 7zh1:B (2.48) BS01 EIC ? GO:0005515 ... P10104
    P59594    		 36417532
    87 7zh1:C (2.48) BS01 EIC ? GO:0005515 ... P10104
    P59594    		 36417532
    88 7zh2:A (2.71) BS01 EIC ? GO:0005515 ... P10104
    P59594    		 36417532
    89 7zh2:B (2.71) BS01 EIC ? GO:0005515 ... P10104
    P59594    		 36417532
    90 7zh2:C (2.71) BS01 EIC ? GO:0005515 ... P10104
    P59594    		 36417532
    91 8h0x:A (2.57) BS01 EIC ? GO:0005515 ... P59594 37402591
    92 8h0x:B (2.57) BS01 EIC ? GO:0005515 ... P59594 37402591
    93 8h0x:C (2.57) BS01 EIC ? GO:0005515 ... P59594 37402591
    94 8h0y:A (2.85) BS01 EIC ? GO:0005515 ... P59594 37402591
    95 8h0y:B (2.85) BS01 EIC ? GO:0005515 ... P59594 37402591
    96 8h0y:C (2.85) BS01 EIC ? GO:0005515 ... P59594 37402591
    97 8h0z:A (2.99) BS01 EIC ? GO:0005515 ... P59594 37402591
    98 8h0z:B (2.99) BS02 EIC ? GO:0005515 ... P59594 37402591
    99 8h0z:C (2.99) BS01 EIC ? GO:0005515 ... P59594 37402591
    100 8h10:A (2.99) BS02 EIC ? GO:0005515 ... P59594 37402591
    101 8h10:B (2.99) BS01 EIC ? GO:0005515 ... P59594 37402591
    102 8h10:C (2.99) BS01 EIC ? GO:0005515 ... P59594 37402591
    103 8h14:A (3.39) BS01 EIC ? GO:0005515 ... P59594 37402591
    104 8h14:B (3.39) BS01 EIC ? GO:0005515 ... P59594 37402591
    105 8h14:C (3.39) BS01 EIC ? GO:0005515 ... P59594 37402591
    106 8hlc:A (2.8) BS01 EIC ? N/A P0DTC2 N/A
    107 8hlc:B (2.8) BS01 EIC ? N/A P0DTC2 N/A
    108 8hlc:C (2.8) BS01 EIC ? N/A P0DTC2 N/A
    109 8id4:R (3.1) BS01 EIC ? GO:0001818 ... Q5NUL3 36862765
    110 8tc0:A (1.88) BS01 EIC ? GO:0016020 ... U5WI05 38805567
    111 8tc0:B (1.88) BS02 EIC ? GO:0016020 ... U5WI05 38805567
    112 8tc0:C (1.88) BS01 EIC ? GO:0016020 ... U5WI05 38805567
    113 8tc1:A (1.92) BS01 EIC ? GO:0016020 ... Q3ZTF3 38805567
    114 8tc1:B (1.92) BS01 EIC ? GO:0016020 ... Q3ZTF3 38805567
    115 8tc1:C (1.92) BS01 EIC ? GO:0016020 ... Q3ZTF3 38805567
    116 8tc5:A (2.11) BS01 EIC N/A GO:0016020 ... P59594 38805567
    117 8tc5:B (2.11) BS01 EIC N/A GO:0016020 ... P59594 38805567
    118 8tc5:C (2.11) BS02 EIC N/A GO:0016020 ... P59594 38805567
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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