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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 240 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6g2j:U (3.3) BS01 EHZ ? GO:0005654 ... Q9CR21 29915388
    2 6g2j:W (3.3) BS01 EHZ ? GO:0003674 ... Q9CQZ5 29915388
    3 6g2j:n (3.3) BS01 EHZ ? GO:0005739 ... Q9CQJ8 29915388
    4 6g72:U (3.9) BS01 EHZ ? GO:0005654 ... Q9CR21 29915388
    5 6g72:W (3.9) BS01 EHZ ? GO:0003674 ... Q9CQZ5 29915388
    6 6g72:n (3.9) BS01 EHZ ? GO:0005739 ... Q9CQJ8 29915388
    7 6yj4:W (2.7) BS01 EHZ ? GO:0005739 ... Q6CI60 32747785
    8 6yj4:n (2.7) BS01 EHZ ? GO:0005739 ... Q6C9Z1 32747785
    9 6zr2:T (3.1) BS01 EHZ ? GO:0005654 ... Q9CR21 33067417
    10 6zr2:U (3.1) BS01 EHZ ? GO:0005654 ... Q9CR21 33067417
    11 6zr2:W (3.1) BS01 EHZ ? GO:0003674 ... Q9CQZ5 33067417
    12 6zr2:n (3.1) BS01 EHZ ? GO:0005739 ... Q9CQJ8 33067417
    13 6ztq:U (3.0) BS01 EHZ ? GO:0005654 ... Q9CR21 33067417
    14 6ztq:W (3.0) BS01 EHZ ? GO:0003674 ... Q9CQZ5 33067417
    15 6ztq:n (3.0) BS01 EHZ ? GO:0005739 ... Q9CQJ8 33067417
    16 7ak5:W (3.17) BS01 EHZ ? GO:0003674 ... Q9CQZ5 33514727
    17 7ak5:n (3.17) BS01 EHZ ? GO:0005739 ... Q9CQJ8 33514727
    18 7ak6:T (3.82) BS01 EHZ ? GO:0005654 ... Q9CR21 33514727
    19 7ak6:U (3.82) BS01 EHZ ? GO:0005654 ... Q9CR21 33514727
    20 7ak6:W (3.82) BS01 EHZ ? GO:0003674 ... Q9CQZ5 33514727
    21 7ak6:n (3.82) BS01 EHZ ? GO:0005739 ... Q9CQJ8 33514727
    22 7b0n:T (3.7) BS01 EHZ ? GO:0006633 ... A0A1H6PXT9 33640456
    23 7b0n:U (3.7) BS01 EHZ ? GO:0006633 ... A0A1D8NG21 33640456
    24 7b0n:W (3.7) BS01 EHZ ? GO:0005739 ... A0A1D8N3C8 33640456
    25 7b0n:n (3.7) BS01 EHZ ? GO:0005739 ... A0A1D8NDL1 33640456
    26 7b93:W (3.04) BS01 EHZ ? GO:0003674 ... Q9CQZ5 33990335
    27 7b93:n (3.04) BS01 EHZ ? GO:0005739 ... Q9CQJ8 33990335
    28 7psa:W (3.4) BS01 EHZ ? GO:0003674 ... Q9CQZ5 35063503
    29 7psa:n (3.4) BS01 EHZ ? GO:0005739 ... Q9CQJ8 35063503
    30 7qsd:T (3.1) BS01 EHZ ? GO:0000035 ... P52505 36701435
    31 7qsd:W (3.1) BS01 EHZ ? GO:0005739 ... Q02366 36701435
    32 7qsd:n (3.1) BS01 EHZ ? GO:0005739 ... Q02369 36701435
    33 7qsk:W (2.84) BS01 EHZ ? GO:0005739 ... Q02366 35589726
    34 7qsk:n (2.84) BS01 EHZ ? GO:0005739 ... Q02369 35589726
    35 7qsl:T (2.76) BS01 EHZ ? GO:0000035 ... P52505 35589726
    36 7qsl:W (2.76) BS01 EHZ ? GO:0005739 ... Q02366 35589726
    37 7qsl:n (2.76) BS01 EHZ ? GO:0005739 ... Q02369 35589726
    38 7qsm:W (2.3) BS01 EHZ ? GO:0005739 ... Q02366 35589726
    39 7qsm:n (2.3) BS01 EHZ ? GO:0005739 ... Q02369 35589726
    40 7qsn:T (2.81) BS01 EHZ ? GO:0000035 ... P52505 35589726
    41 7qsn:W (2.81) BS01 EHZ ? GO:0005739 ... Q02366 35589726
    42 7qsn:n (2.81) BS01 EHZ ? GO:0005739 ... Q02369 35589726
    43 7qso:W (3.02) BS01 EHZ ? GO:0005739 ... Q02366 35589726
    44 7qso:n (3.02) BS01 EHZ ? GO:0005739 ... Q02369 35589726
    45 7r41:T (2.3) BS01 EHZ ? GO:0000035 ... P52505 36701435
    46 7r41:W (2.3) BS01 EHZ ? GO:0005739 ... Q02366 36701435
    47 7r41:n (2.3) BS01 EHZ ? GO:0005739 ... Q02369 36701435
    48 7r42:W (2.3) BS01 EHZ ? GO:0005739 ... Q02366 36701435
    49 7r42:n (2.3) BS01 EHZ ? GO:0005739 ... Q02369 36701435
    50 7r43:T (2.4) BS01 EHZ ? GO:0000035 ... P52505 36701435
    51 7r43:W (2.4) BS01 EHZ ? GO:0005739 ... Q02366 36701435
    52 7r43:n (2.4) BS01 EHZ ? GO:0005739 ... Q02369 36701435
    53 7r44:T (2.4) BS01 EHZ ? GO:0000035 ... P52505 36701435
    54 7r44:W (2.4) BS01 EHZ ? GO:0005739 ... Q02366 36701435
    55 7r44:n (2.4) BS01 EHZ ? GO:0005739 ... Q02369 36701435
    56 7r45:T (2.4) BS01 EHZ ? GO:0000035 ... P52505 36701435
    57 7r45:W (2.4) BS01 EHZ ? GO:0005739 ... Q02366 36701435
    58 7r45:n (2.4) BS01 EHZ ? GO:0005739 ... Q02369 36701435
    59 7r46:T (2.4) BS01 EHZ ? GO:0000035 ... P52505 36701435
    60 7r46:W (2.4) BS01 EHZ ? GO:0005739 ... Q02366 36701435
    61 7r46:n (2.4) BS01 EHZ ? GO:0005739 ... Q02369 36701435
    62 7r47:T (2.3) BS01 EHZ ? GO:0000035 ... P52505 36701435
    63 7r47:U (2.3) BS01 EHZ ? GO:0000035 ... P52505 36701435
    64 7r47:W (2.3) BS01 EHZ ? GO:0005739 ... Q02366 36701435
    65 7r47:n (2.3) BS01 EHZ ? GO:0005739 ... Q02369 36701435
    66 7r48:T (2.3) BS01 EHZ ? GO:0000035 ... P52505 36701435
    67 7r48:W (2.3) BS01 EHZ ? GO:0005739 ... Q02366 36701435
    68 7r48:n (2.3) BS01 EHZ ? GO:0005739 ... Q02369 36701435
    69 7r4c:T (2.3) BS01 EHZ ? GO:0000035 ... P52505 36701435
    70 7r4c:W (2.3) BS01 EHZ ? GO:0005739 ... Q02366 36701435
    71 7r4c:n (2.3) BS01 EHZ ? GO:0005739 ... Q02369 36701435
    72 7r4d:T (2.3) BS01 EHZ ? GO:0000035 ... P52505 36701435
    73 7r4d:W (2.3) BS01 EHZ ? GO:0005739 ... Q02366 36701435
    74 7r4d:n (2.3) BS01 EHZ ? GO:0005739 ... Q02369 36701435
    75 7r4f:U (2.4) BS01 EHZ ? GO:0000035 ... P52505 36701435
    76 7r4f:W (2.4) BS01 EHZ ? GO:0005739 ... Q02366 36701435
    77 7r4f:n (2.4) BS01 EHZ ? GO:0005739 ... Q02369 36701435
    78 7r4g:T (2.5) BS01 EHZ ? GO:0000035 ... P52505 36701435
    79 7r4g:W (2.5) BS01 EHZ ? GO:0005739 ... Q02366 36701435
    80 7r4g:n (2.5) BS01 EHZ ? GO:0005739 ... Q02369 36701435
    81 8b9z:W (3.28) BS01 EHZ ? GO:0005739 ... Q7JZK1 36622099
    82 8b9z:n (3.28) BS01 EHZ ? GO:0005739 ... Q9VJZ4 36622099
    83 8ba0:T (3.68) BS01 EHZ ? GO:0000035 ... Q94519 36622099
    84 8ba0:U (3.68) BS01 EHZ ? GO:0000035 ... Q94519 36622099
    85 8ba0:W (3.68) BS01 EHZ ? GO:0005739 ... Q7JZK1 36622099
    86 8ba0:n (3.68) BS01 EHZ ? GO:0005739 ... Q9VJZ4 36622099
    87 8c2s:T (3.9) BS01 EHZ ? GO:0005654 ... Q9CR21 38177503
    88 8c2s:U (3.9) BS01 EHZ ? GO:0005654 ... Q9CR21 38177503
    89 8c2s:W (3.9) BS01 EHZ ? GO:0003674 ... Q9CQZ5 38177503
    90 8c2s:n (3.9) BS01 EHZ ? GO:0005739 ... Q9CQJ8 38177503
    91 8ca3:T (3.2) BS01 EHZ ? GO:0005654 ... Q9CR21 38177503
    92 8ca3:W (3.2) BS01 EHZ ? GO:0003674 ... Q9CQZ5 38177503
    93 8ca3:n (3.2) BS01 EHZ ? GO:0005739 ... Q9CQJ8 38177503
    94 8ca5:T (3.9) BS01 EHZ ? GO:0005654 ... Q9CR21 38177503
    95 8ca5:U (3.9) BS01 EHZ ? GO:0005654 ... Q9CR21 38177503
    96 8ca5:W (3.9) BS01 EHZ ? GO:0003674 ... Q9CQZ5 38177503
    97 8ca5:n (3.9) BS01 EHZ ? GO:0005739 ... Q9CQJ8 38177503
    98 8iao:W (4.2) BS01 EHZ N/A N/A Q9CQZ5 N/A
    99 8iao:n (4.2) BS01 EHZ N/A N/A Q9CQJ8 N/A
    100 8iap:W (3.2) BS01 EHZ N/A N/A Q9CQZ5 N/A
    101 8iaq:n (3.4) BS01 EHZ N/A N/A Q9CQJ8 N/A
    102 8ib4:W (4.3) BS01 EHZ N/A N/A Q9CQZ5 N/A
    103 8ib4:n (4.3) BS01 EHZ N/A N/A Q9CQJ8 N/A
    104 8ib5:W (3.3) BS01 EHZ N/A N/A Q9CQZ5 N/A
    105 8ib6:n (3.3) BS01 EHZ N/A N/A Q9CQJ8 N/A
    106 8ib9:W (4.3) BS01 EHZ N/A N/A Q9CQZ5 N/A
    107 8ib9:n (4.3) BS01 EHZ N/A N/A Q9CQJ8 N/A
    108 8iba:W (3.2) BS01 EHZ N/A N/A Q9CQZ5 N/A
    109 8ibb:n (3.3) BS01 EHZ N/A N/A Q9CQJ8 N/A
    110 8ibd:W (4.2) BS01 EHZ N/A N/A Q9CQZ5 N/A
    111 8ibd:n (4.2) BS01 EHZ N/A N/A Q9CQJ8 N/A
    112 8ibe:W (3.3) BS01 EHZ N/A N/A Q9CQZ5 N/A
    113 8ibf:n (3.3) BS01 EHZ N/A N/A Q9CQJ8 N/A
    114 8ic2:W (6.3) BS01 EHZ N/A N/A Q9CQZ5 N/A
    115 8ic2:n (6.3) BS01 EHZ N/A N/A Q9CQJ8 N/A
    116 8ic3:W (3.2) BS01 EHZ N/A N/A Q9CQZ5 N/A
    117 8ic4:n (3.2) BS01 EHZ N/A N/A Q9CQJ8 N/A
    118 8olt:T (2.84) BS01 EHZ ? GO:0005654 ... Q9CR21 37531432
    119 8olt:W (2.84) BS01 EHZ ? GO:0003674 ... Q9CQZ5 37531432
    120 8olt:n (2.84) BS01 EHZ ? GO:0005739 ... Q9CQJ8 37531432
    121 8om1:U (2.39) BS01 EHZ ? GO:0005654 ... Q9CR21 37531432
    122 8om1:W (2.39) BS01 EHZ ? GO:0003674 ... Q9CQZ5 37531432
    123 8om1:n (2.39) BS01 EHZ ? GO:0005739 ... Q9CQJ8 37531432
    124 8q0a:T (3.1) BS01 EHZ ? GO:0000035 ... P52505 38870289
    125 8q0a:U (3.1) BS01 EHZ ? GO:0000035 ... P52505 38870289
    126 8q0a:W (3.1) BS01 EHZ ? GO:0005739 ... Q02366 38870289
    127 8q0a:n (3.1) BS01 EHZ ? GO:0005739 ... Q02369 38870289
    128 8q0f:U (3.1) BS01 EHZ ? GO:0000035 ... P52505 38870289
    129 8q0f:W (3.1) BS01 EHZ ? GO:0005739 ... Q02366 38870289
    130 8q0f:n (3.1) BS01 EHZ ? GO:0005739 ... Q02369 38870289
    131 8q0j:W (3.8) BS01 EHZ ? GO:0005739 ... Q02366 38870289
    132 8q0j:n (3.8) BS01 EHZ ? GO:0005739 ... Q02369 38870289
    133 8q0m:W (3.1) BS01 EHZ ? GO:0005739 ... Q02366 38870289
    134 8q0m:n (3.1) BS01 EHZ ? GO:0005739 ... Q02369 38870289
    135 8q0o:U (3.1) BS01 EHZ ? GO:0000035 ... P52505 38870289
    136 8q0o:W (3.1) BS01 EHZ ? GO:0005739 ... Q02366 38870289
    137 8q0o:n (3.1) BS01 EHZ ? GO:0005739 ... Q02369 38870289
    138 8q0q:W (3.6) BS01 EHZ ? GO:0005739 ... Q02366 38870289
    139 8q0q:n (3.6) BS01 EHZ ? GO:0005739 ... Q02369 38870289
    140 8q1p:T (2.9) BS01 EHZ ? GO:0000035 ... P52505 38870289
    141 8q1p:W (2.9) BS01 EHZ ? GO:0005739 ... Q02366 38870289
    142 8q1p:n (2.9) BS01 EHZ ? GO:0005739 ... Q02369 38870289
    143 8q1u:T (3.3) BS01 EHZ ? GO:0000035 ... P52505 38870289
    144 8q1u:W (3.3) BS01 EHZ ? GO:0005739 ... Q02366 38870289
    145 8q1u:n (3.3) BS01 EHZ ? GO:0005739 ... Q02369 38870289
    146 8q1y:U (2.6) BS01 EHZ ? GO:0000035 ... P52505 38870289
    147 8q1y:W (2.6) BS01 EHZ ? GO:0005739 ... Q02366 38870289
    148 8q1y:n (2.6) BS01 EHZ ? GO:0005739 ... Q02369 38870289
    149 8q25:T (2.8) BS01 EHZ ? GO:0000035 ... P52505 38870289
    150 8q25:W (2.8) BS01 EHZ ? GO:0005739 ... Q02366 38870289
    151 8q25:n (2.8) BS01 EHZ ? GO:0005739 ... Q02369 38870289
    152 8q45:T (2.7) BS01 EHZ ? GO:0000035 ... P52505 38870289
    153 8q45:W (2.7) BS01 EHZ ? GO:0005739 ... Q02366 38870289
    154 8q45:n (2.7) BS01 EHZ ? GO:0005739 ... Q02369 38870289
    155 8q46:T (2.6) BS01 EHZ ? GO:0000035 ... P52505 38870289
    156 8q46:U (2.6) BS01 EHZ ? GO:0000035 ... P52505 38870289
    157 8q46:W (2.6) BS01 EHZ ? GO:0005739 ... Q02366 38870289
    158 8q46:n (2.6) BS01 EHZ ? GO:0005739 ... Q02369 38870289
    159 8q47:T (2.9) BS01 EHZ ? GO:0000035 ... P52505 38870289
    160 8q47:U (2.9) BS01 EHZ ? GO:0000035 ... P52505 38870289
    161 8q47:W (2.9) BS01 EHZ ? GO:0005739 ... Q02366 38870289
    162 8q47:n (2.9) BS01 EHZ ? GO:0005739 ... Q02369 38870289
    163 8q48:W (2.5) BS01 EHZ ? GO:0005739 ... Q02366 38870289
    164 8q48:n (2.5) BS01 EHZ ? GO:0005739 ... Q02369 38870289
    165 8q49:U (2.6) BS01 EHZ ? GO:0000035 ... P52505 38870289
    166 8q49:W (2.6) BS01 EHZ ? GO:0005739 ... Q02366 38870289
    167 8q49:n (2.6) BS01 EHZ ? GO:0005739 ... Q02369 38870289
    168 8q4a:W (2.6) BS01 EHZ ? GO:0005739 ... Q02366 38870289
    169 8q4a:n (2.6) BS01 EHZ ? GO:0005739 ... Q02369 38870289
    170 8ud1:1U (2.1) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    171 8ud1:1W (2.1) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    172 8ud1:1n (2.1) BS01 EHZ N/A N/A K7GSE5 38811722
    173 8ueo:1T (3.8) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    174 8ueo:1U (3.8) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    175 8ueo:1W (3.8) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    176 8ueo:1n (3.8) BS01 EHZ N/A N/A K7GSE5 38811722
    177 8uep:1U (3.4) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    178 8uep:1W (3.4) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    179 8uep:1n (3.4) BS01 EHZ N/A N/A K7GSE5 38811722
    180 8ueq:1T (3.4) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    181 8ueq:1U (3.4) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    182 8ueq:1W (3.4) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    183 8ueq:1n (3.4) BS01 EHZ N/A N/A K7GSE5 38811722
    184 8uer:1T (3.5) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    185 8uer:1U (3.5) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    186 8uer:1W (3.5) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    187 8uer:1n (3.5) BS01 EHZ N/A N/A K7GSE5 38811722
    188 8ues:1T (3.6) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    189 8ues:1U (3.6) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    190 8ues:1W (3.6) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    191 8ues:1n (3.6) BS01 EHZ N/A N/A K7GSE5 38811722
    192 8uet:1T (3.7) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    193 8uet:1W (3.7) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    194 8uet:1n (3.7) BS01 EHZ N/A N/A K7GSE5 38811722
    195 8ueu:1T (3.6) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    196 8ueu:1U (3.6) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    197 8ueu:1W (3.6) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    198 8ueu:1n (3.6) BS01 EHZ N/A N/A K7GSE5 38811722
    199 8uev:1T (3.7) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    200 8uev:1W (3.7) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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