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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 168 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1gk0:B (2.5) BS02 EDO 3.5.1.93 GO:0016787 ... P07662 11742126
    2 1gk0:D (2.5) BS02 EDO 3.5.1.93 GO:0016787 ... P07662 11742126
    3 1gkf:B (1.41) BS01 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    4 1gkf:B (1.41) BS02 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    5 1gkf:B (1.41) BS03 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    6 1gkf:B (1.41) BS04 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    7 1gkf:B (1.41) BS05 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    8 1gkf:B (1.41) BS06 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    9 1gkf:B (1.41) BS07 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    10 1gkf:B (1.41) BS08 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    11 1gkf:B (1.41) BS09 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    12 1gkf:B (1.41) BS10 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    13 1gkf:B (1.41) BS11 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    14 1gm9:A (1.8) BS01 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    15 1gm9:A (1.8) BS02 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    16 1gm9:B (1.8) BS01 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    17 1gm9:B (1.8) BS02 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    18 1gm9:B (1.8) BS03 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    19 1gm9:B (1.8) BS04 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    20 1gm9:B (1.8) BS05 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    21 1gm9:B (1.8) BS06 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    22 1gm9:B (1.8) BS07 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    23 1gm9:B (1.8) BS08 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    24 1gm9:B (1.8) BS09 EDO 3.5.1.11 GO:0016787 ... P06875 11601852
    25 1klj:H (2.44) BS02 EDO 3.4.21.21 GO:0004252 ... P08709 12225752
    26 1llu:A (2.3) BS04 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    27 1llu:A (2.3) BS05 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    28 1llu:B (2.3) BS04 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    29 1llu:C (2.3) BS04 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    30 1llu:C (2.3) BS05 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    31 1llu:D (2.3) BS04 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    32 1llu:E (2.3) BS04 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    33 1llu:E (2.3) BS05 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    34 1llu:F (2.3) BS04 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    35 1llu:G (2.3) BS04 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    36 1llu:G (2.3) BS05 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    37 1llu:H (2.3) BS04 EDO 1.1.1.1 GO:0000166 ... Q9HTD9 15152088
    38 1s6f:A (1.8) BS03 EDO 3.4.21.4 GO:0004252 ... P00761 15005618
    39 1s6f:A (1.8) BS04 EDO 3.4.21.4 GO:0004252 ... P00761 15005618
    40 1s6f:A (1.8) BS05 EDO 3.4.21.4 GO:0004252 ... P00761 15005618
    41 1s81:A (1.7) BS02 EDO 3.4.21.4 GO:0004252 ... P00761 15005618
    42 1s81:A (1.7) BS03 EDO 3.4.21.4 GO:0004252 ... P00761 15005618
    43 1s81:A (1.7) BS04 EDO 3.4.21.4 GO:0004252 ... P00761 15005618
    44 1s82:A (1.85) BS02 EDO 3.4.21.4 GO:0004252 ... P00761 15005618
    45 1s82:A (1.85) BS03 EDO 3.4.21.4 GO:0004252 ... P00761 15005618
    46 1ua3:A (2.01) BS11 EDO 3.2.1.1 GO:0003824 ... P00690 12962327
    47 1ua3:A (2.01) BS12 EDO 3.2.1.1 GO:0003824 ... P00690 12962327
    48 1ua3:A (2.01) BS13 EDO 3.2.1.1 GO:0003824 ... P00690 12962327
    49 1y9a:A (1.81) BS05 EDO 1.1.1.80 GO:0005737 ... P35630 16627948
    50 1y9a:C (1.81) BS05 EDO 1.1.1.80 GO:0005737 ... P35630 16627948
    51 2d2j:A (1.75) BS03 EDO 3.1.8.1 GO:0008270 ... Q93LD7 16054447
    52 2g81:E (1.55) BS02 EDO 3.4.21.4 GO:0004175 ... P00760 17142290
    53 2op4:H (2.85) BS01 EDO ? N/A Q5BJZ2 17400249
    54 2vb1:A (0.65) BS02 EDO 3.2.1.17 GO:0003796 ... P00698 18084073
    55 2yk4:A (1.94) BS02 EDO 2.4.3.6 N/A P72097 21880735
    56 2yk5:A (2.32) BS02 EDO 2.4.3.6 N/A P72097 21880735
    57 2yk5:A (2.32) BS03 EDO 2.4.3.6 N/A P72097 21880735
    58 2yk7:A (2.18) BS02 EDO 2.4.3.6 N/A P72097 21880735
    59 3ak3:B (1.48) BS02 EDO 1.15.1.1 GO:0004784 ... Q9Y8H8 21182595
    60 3ak3:B (1.48) BS03 EDO 1.15.1.1 GO:0004784 ... Q9Y8H8 21182595
    61 3ak3:B (1.48) BS04 EDO 1.15.1.1 GO:0004784 ... Q9Y8H8 21182595
    62 3ak3:B (1.48) BS05 EDO 1.15.1.1 GO:0004784 ... Q9Y8H8 21182595
    63 3ak3:C (1.48) BS01 EDO 1.15.1.1 GO:0004784 ... Q9Y8H8 21182595
    64 3ak3:C (1.48) BS03 EDO 1.15.1.1 GO:0004784 ... Q9Y8H8 21182595
    65 3bs6:A (1.8) BS02 EDO ? GO:0016020 ... P25714 18234665
    66 3e2c:A (1.8) BS04 EDO 1.16.3.1 GO:0004322 ... P0ABD3 19439409
    67 3e2c:A (1.8) BS05 EDO 1.16.3.1 GO:0004322 ... P0ABD3 19439409
    68 3e2c:B (1.8) BS04 EDO 1.16.3.1 GO:0004322 ... P0ABD3 19439409
    69 3e2c:B (1.8) BS05 EDO 1.16.3.1 GO:0004322 ... P0ABD3 19439409
    70 3fc4:A (1.79) BS05 EDO 1.2.99.7 GO:0005506 ... Q46509 19459677 MOAD: Ki=1.9mM
    71 3ru4:D (1.68) BS02 EDO 3.4.21.1 GO:0004252 ... P00766 N/A
    72 3ru4:T (1.68) BS02 EDO 3.4.21.4 GO:0004175 ... P00760 N/A
    73 3ru4:T (1.68) BS03 EDO 3.4.21.4 GO:0004175 ... P00760 N/A
    74 3wa2:X (1.08) BS02 EDO 1.4.3.21 GO:0005507 ... P46881 24311589
    75 3wa2:X (1.08) BS03 EDO 1.4.3.21 GO:0005507 ... P46881 24311589
    76 3wa2:X (1.08) BS04 EDO 1.4.3.21 GO:0005507 ... P46881 24311589
    77 3wa2:X (1.08) BS05 EDO 1.4.3.21 GO:0005507 ... P46881 24311589
    78 3wa2:X (1.08) BS06 EDO 1.4.3.21 GO:0005507 ... P46881 24311589
    79 3wa2:X (1.08) BS07 EDO 1.4.3.21 GO:0005507 ... P46881 24311589
    80 3wa2:X (1.08) BS08 EDO 1.4.3.21 GO:0005507 ... P46881 24311589
    81 3wa2:X (1.08) BS09 EDO 1.4.3.21 GO:0005507 ... P46881 24311589
    82 3wa2:X (1.08) BS10 EDO 1.4.3.21 GO:0005507 ... P46881 24311589
    83 3wur:B (1.45) BS05 EDO ? N/A Q9K0P4 25287606
    84 3wxb:A (1.98) BS02 EDO 1.1.1.184 GO:0000166 ... F1N9C1 26206323
    85 4as8:A (1.02) BS01 EDO ? GO:0003674 ... P42212 23090407
    86 4as8:A (1.02) BS02 EDO ? GO:0003674 ... P42212 23090407
    87 4as8:A (1.02) BS03 EDO ? GO:0003674 ... P42212 23090407
    88 4as8:A (1.02) BS04 EDO ? GO:0003674 ... P42212 23090407
    89 4as8:A (1.02) BS05 EDO ? GO:0003674 ... P42212 23090407
    90 4as8:A (1.02) BS06 EDO ? GO:0003674 ... P42212 23090407
    91 4as8:A (1.02) BS07 EDO ? GO:0003674 ... P42212 23090407
    92 4as8:A (1.02) BS08 EDO ? GO:0003674 ... P42212 23090407
    93 4as8:A (1.02) BS09 EDO ? GO:0003674 ... P42212 23090407
    94 4f1w:A (1.36) BS01 EDO N/A GO:0003824 ... N/A 23685211
    95 4f1w:A (1.36) BS02 EDO N/A GO:0003824 ... N/A 23685211
    96 4f2w:B (2.0) BS02 EDO N/A GO:0003824 ... N/A 23685211
    97 4f2w:B (2.0) BS03 EDO N/A GO:0003824 ... N/A 23685211
    98 4f3c:B (1.93) BS02 EDO N/A GO:0003824 ... N/A 23685211
    99 4f3k:B (1.85) BS02 EDO N/A GO:0003824 ... N/A 23685211
    100 4fwk:A (2.8) BS01 EDO 2.7.2.15 GO:0005524 ... O06961 23747922
    101 4fwm:A (2.95) BS01 EDO 2.7.2.15 GO:0005524 ... O06961 23747922
    102 4fwo:A (2.9) BS01 EDO 2.7.2.15 GO:0005524 ... O06961 23747922
    103 4fwp:A (2.5) BS01 EDO 2.7.2.15 GO:0005524 ... O06961 23747922
    104 4fws:A (2.69) BS01 EDO 2.7.2.15 GO:0005524 ... O06961 23747922
    105 4fws:A (2.69) BS02 EDO 2.7.2.15 GO:0005524 ... O06961 23747922
    106 4fws:A (2.69) BS03 EDO 2.7.2.15 GO:0005524 ... O06961 23747922
    107 4pm1:B (1.23) BS01 EDO ? GO:0005179 ... P02766 25224922
    108 4pm1:B (1.23) BS02 EDO ? GO:0005179 ... P02766 25224922
    109 4pme:A (1.264) BS02 EDO ? GO:0005179 ... P02766 25224922
    110 4pmf:B (1.35) BS02 EDO ? GO:0005179 ... P02766 25224922
    111 4rwm:A (1.8) BS01 EDO 1.7.2.9 GO:0006809 ... Q1PX48 26249351
    112 4rwm:A (1.8) BS02 EDO 1.7.2.9 GO:0006809 ... Q1PX48 26249351
    113 4rwm:A (1.8) BS03 EDO 1.7.2.9 GO:0006809 ... Q1PX48 26249351
    114 4rwm:A (1.8) BS04 EDO 1.7.2.9 GO:0006809 ... Q1PX48 26249351
    115 4rwm:A (1.8) BS05 EDO 1.7.2.9 GO:0006809 ... Q1PX48 26249351
    116 4tq8:B (1.52) BS02 EDO ? GO:0005179 ... P02766 26235916
    117 4xwl:A (2.051) BS05 EDO 3.2.1.91 GO:0004553 ... O65986 26457517
    118 4xwl:A (2.051) BS06 EDO 3.2.1.91 GO:0004553 ... O65986 26457517
    119 4xwl:A (2.051) BS07 EDO 3.2.1.91 GO:0004553 ... O65986 26457517
    120 4xwl:A (2.051) BS08 EDO 3.2.1.91 GO:0004553 ... O65986 26457517
    121 5aih:A (1.42) BS01 EDO N/A N/A N/A 26032250
    122 5aih:A (1.42) BS02 EDO N/A N/A N/A 26032250
    123 5aih:A (1.42) BS03 EDO N/A N/A N/A 26032250
    124 5aih:B (1.42) BS01 EDO N/A N/A N/A 26032250
    125 5aih:B (1.42) BS02 EDO N/A N/A N/A 26032250
    126 5aih:B (1.42) BS03 EDO N/A N/A N/A 26032250
    127 5e4t:A (2.43) BS02 EDO 3.1.1.7 GO:0001507 ... P04058 26990888
    128 5e4t:A (2.43) BS03 EDO 3.1.1.7 GO:0001507 ... P04058 26990888
    129 5efd:A (1.674) BS02 EDO 3.2.1.8 GO:0004553 ... O30700 33570386
    130 5efd:A (1.674) BS03 EDO 3.2.1.8 GO:0004553 ... O30700 33570386
    131 5efd:A (1.674) BS04 EDO 3.2.1.8 GO:0004553 ... O30700 33570386
    132 5efd:B (1.674) BS02 EDO 3.2.1.8 GO:0004553 ... O30700 33570386
    133 5efd:B (1.674) BS03 EDO 3.2.1.8 GO:0004553 ... O30700 33570386
    134 5efd:B (1.674) BS04 EDO 3.2.1.8 GO:0004553 ... O30700 33570386
    135 5efd:B (1.674) BS05 EDO 3.2.1.8 GO:0004553 ... O30700 33570386
    136 5euj:A (2.15) BS03 EDO 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    137 5euj:E (2.15) BS03 EDO 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    138 5euj:F (2.15) BS02 EDO 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    139 5euj:I (2.15) BS03 EDO 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    140 5euj:J (2.15) BS02 EDO 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    141 5euj:M (2.15) BS04 EDO 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    142 5euj:N (2.15) BS04 EDO 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    143 5euj:Q (2.15) BS03 EDO 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    144 5euj:Q (2.15) BS05 EDO 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    145 5euj:R (2.15) BS04 EDO 4.1.1.1 GO:0000287 ... Q8KTX6 27599861
    146 6qg9:A (2.05) BS01 EDO 3.1.1.102 GO:0009279 ... A0A0K8P8E7 30979881
    147 6rvq:A (1.136) BS03 EDO ? GO:0003924 ... P0A031 31997533
    148 6si9:A (1.9) BS02 EDO ? GO:0003924 ... P0A031 31997533
    149 6ur3:A (1.423) BS02 EDO 3.5.2.6 GO:0008800 ... P24735 31759850
    150 6ur3:A (1.423) BS03 EDO 3.5.2.6 GO:0008800 ... P24735 31759850
    151 6yjw:A (2.1) BS02 EDO 2.1.1.68 GO:0008168 ... Q9M602 32627748
    152 6yjw:A (2.1) BS03 EDO 2.1.1.68 GO:0008168 ... Q9M602 32627748
    153 6yjw:B (2.1) BS02 EDO 2.1.1.68 GO:0008168 ... Q9M602 32627748
    154 6yjw:B (2.1) BS03 EDO 2.1.1.68 GO:0008168 ... Q9M602 32627748
    155 6yjx:A (1.2) BS01 EDO 3.2.1.17 GO:0003796 ... P00698 32627748
    156 7ei0:A (3.4) BS01 EDO 3.4.22.- GO:0006508 ... Q8I6U4 34974303
    157 7ndr:D (1.97) BS01 EDO ? N/A A0A5N7XFM8 34716322
    158 7o31:H (1.55) BS02 EDO N/A N/A N/A 34161780
    159 7o31:H (1.55) BS03 EDO N/A N/A N/A 34161780
    160 7o31:L (1.55) BS02 EDO N/A N/A N/A 34161780
    161 7o31:L (1.55) BS03 EDO N/A N/A N/A 34161780
    162 7zkt:A (2.06) BS04 EDO ? GO:0008080 ... A0A2K1KKM6 36786691
    163 7zkt:D (2.06) BS04 EDO ? GO:0008080 ... A0A2K1KKM6 36786691
    164 8ekg:A (2.65) BS02 EDO 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    165 8ekg:B (2.65) BS02 EDO 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    166 8ekg:B (2.65) BS03 EDO 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    167 8ekg:B (2.65) BS04 EDO 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    168 8ekg:E (2.65) BS01 EDO 3.1.1.102 GO:0009279 ... A0A0K8P8E7 38885634
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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