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BioLiP
Download all results in tab-seperated text for 7 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5ezs:A (2.16) BS01 E6D 2.1.1.-
    2.7.7.-
    2.7.7.19
    2.7.7.48
    3.1.3.84
    3.4.22.-
    3.6.1.15
    3.6.1.74
    3.6.4.13    		 N/A P27282 27030368
    2 7zxa:A (1.6) BS01 E6D 3.4.22.15 GO:0006508 ... P07711 38630165
    3 7zxa:B (1.6) BS01 E6D 3.4.22.15 GO:0006508 ... P07711 38630165
    4 7zxa:C (1.6) BS01 E6D 3.4.22.15 GO:0006508 ... P07711 38630165
    5 7zxa:D (1.6) BS01 E6D 3.4.22.15 GO:0006508 ... P07711 38630165
    6 8hei:A (1.55) BS01 E6D 3.4.22.1 GO:0006508 ... P07858 37990007
    7 8het:A (2.0) BS01 E6D 3.4.22.15 GO:0006508 ... P07711 37990007
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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