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BioLiP
Download all results in tab-seperated text for 125 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3jaa:A (22.0) BS03 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 26503230
    2 3jaa:A (22.0) BS06 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 26503230
    3 3mr2:A (1.83) BS03 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 20577208
    4 3mr2:A (1.83) BS06 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 20577208
    5 3mr3:A (1.75) BS03 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 20577208
    6 3mr3:A (1.75) BS06 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 20577208
    7 3si8:A (2.15) BS03 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 20577208
    8 4dl7:A (1.97) BS03 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 22529383
    9 4ird:A (2.48) BS04 DZ4 2.7.7.7 GO:0000287 ... Q47155 23525461
    10 4ird:F (2.48) BS03 DZ4 2.7.7.7 GO:0000287 ... Q47155 23525461
    11 4j9o:A (2.597) BS05 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 23630267
    12 4o3o:A (1.698) BS03 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 24759104
    13 4rnm:A (2.144) BS03 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 25666608
    14 5dg8:A (2.12) BS03 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 27226627
    15 5dqg:A (2.29) BS03 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 27574558
    16 5f9l:A (2.592) BS03 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    17 5t14:A (3.0) BS06 DZ4 2.7.7.7 GO:0003684 ... Q9UBT6 27894903
    18 5t14:B (3.0) BS06 DZ4 2.7.7.7 GO:0003684 ... Q9UBT6 27894903
    19 5w2c:A (2.5) BS07 DZ4 2.7.7.7 GO:0003684 ... Q9UBT6 28972744
    20 5w2c:B (2.5) BS06 DZ4 2.7.7.7 GO:0003684 ... Q9UBT6 28972744
    21 6bs1:A (3.15) BS07 DZ4 2.7.7.7 GO:0003684 ... Q9UBT6 29715472
    22 6bs1:B (3.15) BS06 DZ4 2.7.7.7 GO:0003684 ... Q9UBT6 29715472
    23 6cst:A (2.0) BS06 DZ4 2.7.7.7 GO:0003684 ... Q9UBT6 30310122
    24 6cst:B (2.0) BS06 DZ4 2.7.7.7 GO:0003684 ... Q9UBT6 30310122
    25 6cub:A (2.05) BS04 DZ4 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 N/A
    26 6d0z:A (1.75) BS05 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 30140014
    27 6dsu:A (1.98) BS04 DZ4 2.7.7.7 GO:0000166 ... E1C9K5 30338759
    28 6e3x:A (2.65) BS06 DZ4 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 N/A
    29 6m7p:A (1.75) BS03 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 30275308
    30 6m7v:A (3.062) BS03 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 30275308
    31 6p1n:A (1.6) BS04 DZ4 2.7.7.7 GO:0003677 ... Q9NP87 31435651
    32 6q02:A (2.09) BS05 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 31704958
    33 6tx0:A (2.01) BS03 DZ4 3.1.5.- N/A Q9Y3Z3 32576829
    34 6tx0:A (2.01) BS05 DZ4 3.1.5.- N/A Q9Y3Z3 32576829
    35 6tx0:A (2.01) BS06 DZ4 3.1.5.- N/A Q9Y3Z3 32576829
    36 6tx0:B (2.01) BS02 DZ4 3.1.5.- N/A Q9Y3Z3 32576829
    37 6tx0:B (2.01) BS03 DZ4 3.1.5.- N/A Q9Y3Z3 32576829
    38 6tx0:B (2.01) BS06 DZ4 3.1.5.- N/A Q9Y3Z3 32576829
    39 6txf:A (2.25) BS03 DZ4 3.1.5.- N/A Q9Y3Z3 32576829
    40 6txf:A (2.25) BS05 DZ4 3.1.5.- N/A Q9Y3Z3 32576829
    41 6txf:A (2.25) BS06 DZ4 3.1.5.- N/A Q9Y3Z3 32576829
    42 6txf:B (2.25) BS02 DZ4 3.1.5.- N/A Q9Y3Z3 32576829
    43 6txf:B (2.25) BS03 DZ4 3.1.5.- N/A Q9Y3Z3 32576829
    44 6txf:B (2.25) BS06 DZ4 3.1.5.- N/A Q9Y3Z3 32576829
    45 6u2o:A (2.3) BS05 DZ4 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 N/A
    46 6u6b:A (3.108) BS06 DZ4 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 32039434
    47 6vkp:A (2.54) BS05 DZ4 2.7.7.7 GO:0000287 ... Q97W02 33881499
    48 6vkp:D (2.54) BS05 DZ4 2.7.7.7 GO:0000287 ... Q97W02 33881499
    49 6vnp:A (2.42) BS03 DZ4 2.7.7.7 GO:0000287 ... Q97W02 N/A
    50 6vnp:D (2.42) BS05 DZ4 2.7.7.7 GO:0000287 ... Q97W02 N/A
    51 6vnp:G (2.42) BS03 DZ4 2.7.7.7 GO:0000287 ... Q97W02 N/A
    52 6vnp:J (2.42) BS03 DZ4 2.7.7.7 GO:0000287 ... Q97W02 N/A
    53 6wya:A (2.41) BS04 DZ4 2.7.7.7 GO:0000166 ... D0VWU9 32817521
    54 6xu1:A (2.2) BS03 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    55 6xu1:A (2.2) BS05 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    56 6xu1:A (2.2) BS07 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    57 6xu1:A (2.2) BS08 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    58 6xu1:B (2.2) BS04 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    59 6xu1:B (2.2) BS06 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    60 6xu1:B (2.2) BS07 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    61 6xu1:B (2.2) BS08 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    62 6xu1:C (2.2) BS01 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    63 6xu1:C (2.2) BS02 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    64 6xu1:C (2.2) BS05 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    65 6xu1:C (2.2) BS07 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    66 6xu1:D (2.2) BS01 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    67 6xu1:D (2.2) BS03 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    68 6xu1:D (2.2) BS04 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    69 6xu1:D (2.2) BS07 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    70 6xu1:E (2.2) BS03 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    71 6xu1:E (2.2) BS06 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    72 6xu1:E (2.2) BS07 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    73 6xu1:E (2.2) BS08 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    74 6xu1:F (2.2) BS05 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    75 6xu1:F (2.2) BS06 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    76 6xu1:F (2.2) BS07 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    77 6xu1:F (2.2) BS08 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    78 6xu1:G (2.2) BS01 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    79 6xu1:G (2.2) BS02 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    80 6xu1:G (2.2) BS03 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    81 6xu1:G (2.2) BS06 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    82 6xu1:H (2.2) BS01 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    83 6xu1:H (2.2) BS02 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    84 6xu1:H (2.2) BS04 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    85 6xu1:H (2.2) BS07 DZ4 3.1.5.- N/A Q9Y3Z3 32576829 MOAD: Ki=0.78uM
    86 7m7l:A (1.58) BS03 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    87 7m7l:A (1.58) BS06 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    88 7m7m:A (1.46) BS03 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    89 7m7m:A (1.46) BS06 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    90 7m7n:A (1.31) BS03 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    91 7m7n:A (1.31) BS06 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    92 7m7o:A (1.8) BS03 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    93 7m7o:A (1.8) BS06 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    94 7m7p:A (1.8) BS03 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    95 7m7p:A (1.8) BS06 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    96 7m7q:A (2.27) BS03 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    97 7m7q:A (2.27) BS06 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    98 7m7r:A (1.81) BS03 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    99 7m7r:A (1.81) BS06 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    100 7m7s:A (1.85) BS03 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    101 7m7s:A (1.85) BS05 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 34088846
    102 7p9j:A (1.9) BS03 DZ4 ? N/A H2J4R1 35508653
    103 7p9j:B (1.9) BS04 DZ4 ? N/A H2J4R1 35508653
    104 7p9j:C (1.9) BS03 DZ4 ? N/A H2J4R1 35508653
    105 7qaz:A (2.11) BS02 DZ4 ? N/A H2J4R1 35508653
    106 7qaz:B (2.11) BS04 DZ4 ? N/A H2J4R1 35508653
    107 7qaz:C (2.11) BS03 DZ4 ? N/A H2J4R1 35508653
    108 8qxj:A (2.65) BS01 DZ4 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    109 8qxj:A (2.65) BS05 DZ4 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    110 8qxj:A (2.65) BS07 DZ4 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    111 8qxj:B (2.65) BS03 DZ4 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    112 8qxj:B (2.65) BS06 DZ4 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    113 8qxj:B (2.65) BS07 DZ4 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    114 8qxj:C (2.65) BS01 DZ4 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    115 8qxj:C (2.65) BS02 DZ4 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    116 8qxj:C (2.65) BS03 DZ4 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    117 8qxj:D (2.65) BS01 DZ4 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    118 8qxj:D (2.65) BS03 DZ4 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    119 8qxj:D (2.65) BS05 DZ4 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    120 8ujt:A (2.31) BS03 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    121 8v7e:A (1.82) BS05 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    122 8v7f:A (2.2) BS05 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    123 8v7g:A (1.52) BS05 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    124 9chw:A (2.16) BS03 DZ4 N/A N/A Q9Y253 39259676
    125 9cj9:A (2.98) BS03 DZ4 N/A N/A Q9Y253 39259676
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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