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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1on3:C (1.9) BS02 DXX 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    2 1on3:F (1.9) BS03 DXX 2.1.3.1 GO:0003989 ... Q8GBW6 12743028
    3 3w8d:A (1.37) BS02 DXX 1.1.1.30 GO:0000166 ... D0VWQ0 N/A
    4 5b4v:A (1.5) BS02 DXX 1.1.1.30 GO:0000166 ... D0VWQ0 27380367
    5 5g1w:A (1.76) BS01 DXX 4.2.1.127
    5.4.4.4    		 GO:0016098 ... E1XUJ2 28068311
    6 5g1w:B (1.76) BS01 DXX 4.2.1.127
    5.4.4.4    		 GO:0016098 ... E1XUJ2 28068311
    7 6l3n:A (1.83) BS01 DXX ? GO:0016740 ... A0A1U9Y7T8 31777147
    8 6l3n:B (1.83) BS01 DXX ? GO:0016740 ... A0A1U9Y7T8 31777147
    9 6l3n:C (1.83) BS01 DXX ? GO:0016740 ... A0A1U9Y7T8 31777147
    10 6l3n:D (1.83) BS01 DXX ? GO:0016740 ... A0A1U9Y7T8 31777147
    11 7ags:A (3.1) BS01 DXX 2.3.1.111 GO:0016740 ... Q02251 33237724
    12 7agu:A (3.1) BS01 DXX 2.3.1.111 GO:0016740 ... Q02251 33237724
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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