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BioLiP
Download all results in tab-seperated text for 8 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3jqa:A (1.9) BS02 DX4 1.5.1.33 GO:0016491 ... Q581W1 19916554 PDBbind: -logKd/Ki=4.46, Ki=35uM
    2 3jqa:B (1.9) BS02 DX4 1.5.1.33 GO:0016491 ... Q581W1 19916554
    3 3jqa:C (1.9) BS02 DX4 1.5.1.33 GO:0016491 ... Q581W1 19916554
    4 3jqa:D (1.9) BS02 DX4 1.5.1.33 GO:0016491 ... Q581W1 19916554
    5 4m5m:A (1.118) BS01 DX4 2.7.6.3 GO:0000287 ... P26281 24613625 MOAD: Kd=18uM
    PDBbind: -logKd/Ki=4.74, Kd=18uM
    6 4xoy:A (2.1) BS01 DX4 2.7.11.24 GO:0000165 ... P63086 26249358
    7 4xp3:A (1.782) BS01 DX4 2.7.11.24 GO:0000165 ... P63086 26249358
    8 5xu8:A (1.81) BS01 DX4 3.4.19.12 GO:0004843 ... O75604 29449607
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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