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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2ybt:A (2.22) BS01 DW0 3.2.1.14 GO:0004553 ... Q9BZP6 21609838 MOAD: ic50=20uM
    PDBbind: -logKd/Ki=4.70, IC50=20uM
    BindingDB: IC50=2.0e+4nM
    2 2ybt:A (2.22) BS02 DW0 3.2.1.14 GO:0004553 ... Q9BZP6 21609838 MOAD: ic50=20uM
    PDBbind: -logKd/Ki=4.70, IC50=20uM
    BindingDB: IC50=2.0e+4nM
    3 2ybt:B (2.22) BS01 DW0 3.2.1.14 GO:0004553 ... Q9BZP6 21609838 MOAD: ic50=20uM
    BindingDB: IC50=2.0e+4nM
    4 2ybt:B (2.22) BS02 DW0 3.2.1.14 GO:0004553 ... Q9BZP6 21609838 MOAD: ic50=20uM
    BindingDB: IC50=2.0e+4nM
    5 2ybt:C (2.22) BS01 DW0 3.2.1.14 GO:0004553 ... Q9BZP6 21609838 MOAD: ic50=20uM
    BindingDB: IC50=2.0e+4nM
    6 2ybt:C (2.22) BS02 DW0 3.2.1.14 GO:0004553 ... Q9BZP6 21609838 MOAD: ic50=20uM
    BindingDB: IC50=2.0e+4nM
    7 2ybt:D (2.22) BS01 DW0 3.2.1.14 GO:0004553 ... Q9BZP6 21609838 MOAD: ic50=20uM
    BindingDB: IC50=2.0e+4nM
    8 2ybt:D (2.22) BS02 DW0 3.2.1.14 GO:0004553 ... Q9BZP6 21609838 MOAD: ic50=20uM
    BindingDB: IC50=2.0e+4nM
    9 2ybt:E (2.22) BS01 DW0 3.2.1.14 GO:0004553 ... Q9BZP6 21609838 MOAD: ic50=20uM
    BindingDB: IC50=2.0e+4nM
    10 2ybt:E (2.22) BS02 DW0 3.2.1.14 GO:0004553 ... Q9BZP6 21609838 MOAD: ic50=20uM
    BindingDB: IC50=2.0e+4nM
    11 2ybt:F (2.22) BS01 DW0 3.2.1.14 GO:0004553 ... Q9BZP6 21609838 MOAD: ic50=20uM
    BindingDB: IC50=2.0e+4nM
    12 2ybt:F (2.22) BS02 DW0 3.2.1.14 GO:0004553 ... Q9BZP6 21609838 MOAD: ic50=20uM
    BindingDB: IC50=2.0e+4nM
    13 8c6z:A (1.85) BS02 DW0 ? GO:0005975 ... F8UNI4 N/A
    14 8c6z:A (1.85) BS03 DW0 ? GO:0005975 ... F8UNI4 N/A
    15 8ose:A (1.35) BS01 DW0 ? GO:0004553 ... F8UNI5 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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