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BioLiP
Download all results in tab-seperated text for 126 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1bdu:A (2.1) BS01 DUR 2.1.1.45 GO:0000287 ... P0A884 9687366
    2 1rxs:B (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    3 1rxs:C (2.8) BS03 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    4 1rxs:D (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    5 1rxs:E (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    6 1rxs:F (2.8) BS01 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    7 1rxs:G (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    8 1rxs:H (2.8) BS01 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    9 1rxs:I (2.8) BS01 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    10 1rxs:J (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    11 1rxs:K (2.8) BS03 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    12 1rxs:M (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    13 1rxs:N (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    14 1rxs:O (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    15 1rxs:P (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    16 1rxs:Q (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    17 1rxs:R (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    18 1rxs:a (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    19 1rxs:b (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    20 1rxs:c (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    21 1rxs:e (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    22 1rxs:h (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    23 1rxs:i (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    24 1rxs:j (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    25 1rxs:k (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    26 1rxs:l (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    27 1tdu:A (2.1) BS01 DUR 2.1.1.45 GO:0000287 ... P0A884 9687366
    28 1tdu:B (2.1) BS01 DUR 2.1.1.45 GO:0000287 ... P0A884 9687366
    29 2c53:A (1.8) BS01 DUR 3.2.2.27 GO:0004844 ... P10186 16306042
    30 2i7d:A (1.2) BS03 DUR 3.1.3.- GO:0000166 ... Q8TCD5 N/A
    31 2i7d:B (1.2) BS03 DUR 3.1.3.- GO:0000166 ... Q8TCD5 N/A
    32 2yb0:A (2.28) BS01 DUR 3.6.1.23 GO:0004170 ... O15826 21454646 MOAD: Kd=140uM
    PDBbind: -logKd/Ki=3.85, Kd=140uM
    33 2yb0:A (2.28) BS02 DUR 3.6.1.23 GO:0004170 ... O15826 21454646 MOAD: Kd=140uM
    PDBbind: -logKd/Ki=3.85, Kd=140uM
    34 2yb0:B (2.28) BS01 DUR 3.6.1.23 GO:0004170 ... O15826 21454646 MOAD: Kd=140uM
    PDBbind: -logKd/Ki=3.85, Kd=140uM
    35 2yb0:B (2.28) BS02 DUR 3.6.1.23 GO:0004170 ... O15826 21454646 MOAD: Kd=140uM
    PDBbind: -logKd/Ki=3.85, Kd=140uM
    36 2yb0:D (2.28) BS01 DUR 3.6.1.23 GO:0004170 ... O15826 21454646 MOAD: Kd=140uM
    37 2yb0:D (2.28) BS02 DUR 3.6.1.23 GO:0004170 ... O15826 21454646 MOAD: Kd=140uM
    38 2yb0:E (2.28) BS01 DUR 3.6.1.23 GO:0004170 ... O15826 21454646 MOAD: Kd=140uM
    39 2yb0:E (2.28) BS02 DUR 3.6.1.23 GO:0004170 ... O15826 21454646 MOAD: Kd=140uM
    40 3kuk:A (2.783) BS02 DUR 2.4.2.3 GO:0003824 ... A5PJH9 20364833
    41 3kuk:B (2.783) BS02 DUR 2.4.2.3 GO:0003824 ... A5PJH9 20364833
    42 4aoo:A (2.3) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    43 4aoo:B (2.3) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    44 4aoo:B (2.3) BS03 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    45 4aoo:C (2.3) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    46 4aoo:D (2.3) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    47 4aoz:A (2.05) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    48 4aoz:B (2.05) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    49 4aoz:C (2.05) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    50 4apz:1 (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    51 4apz:2 (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    52 4apz:3 (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    53 4apz:4 (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    54 4apz:5 (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    55 4apz:6 (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    56 4apz:7 (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    57 4apz:8 (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    58 4apz:9 (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    59 4apz:A (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    60 4apz:B (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    61 4apz:C (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    62 4apz:D (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    63 4apz:E (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    64 4apz:F (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    65 4apz:G (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    66 4apz:H (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    67 4apz:I (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    68 4apz:J (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    69 4apz:K (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    70 4apz:L (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    71 4apz:M (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    72 4apz:N (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    73 4apz:O (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    74 4apz:P (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    75 4apz:Q (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    76 4apz:R (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    77 4apz:S (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    78 4apz:T (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    79 4apz:U (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    80 4apz:V (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    81 4apz:W (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    82 4apz:X (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    83 4apz:Y (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    84 4apz:Z (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    85 4apz:a (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    86 4apz:b (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    87 4apz:c (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    88 4apz:d (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    89 4apz:e (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    90 4apz:f (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    91 4apz:g (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    92 4apz:h (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    93 4apz:i (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    94 4apz:j (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    95 4apz:k (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    96 4apz:l (2.01) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    97 4apz:m (2.01) BS02 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    98 4b0h:A (1.18) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    99 4b0h:B (1.18) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    100 4b0h:C (1.18) BS01 DUR 3.6.1.23 GO:0000287 ... O31801 23897460
    101 4v31:A (1.8) BS02 DUR ? GO:0046872 ... A4TVL0 25448889
    102 4v31:B (1.8) BS02 DUR ? GO:0046872 ... A4TVL0 25448889
    103 4v31:C (1.8) BS02 DUR ? GO:0046872 ... A4TVL0 25448889
    104 5ioq:A (1.93) BS03 DUR 2.1.1.148 GO:0004799 ... Q9WYT0 27214228
    105 5ioq:A (1.93) BS04 DUR 2.1.1.148 GO:0004799 ... Q9WYT0 27214228
    106 5ioq:B (1.93) BS03 DUR 2.1.1.148 GO:0004799 ... Q9WYT0 27214228 MOAD: Kd=78uM
    107 5ioq:B (1.93) BS04 DUR 2.1.1.148 GO:0004799 ... Q9WYT0 27214228 MOAD: Kd=78uM
    108 5ioq:C (1.93) BS03 DUR 2.1.1.148 GO:0004799 ... Q9WYT0 27214228 MOAD: Kd=78uM
    109 5ioq:C (1.93) BS05 DUR 2.1.1.148 GO:0004799 ... Q9WYT0 27214228 MOAD: Kd=78uM
    110 5ioq:D (1.93) BS03 DUR 2.1.1.148 GO:0004799 ... Q9WYT0 27214228 MOAD: Kd=78uM
    111 5ioq:D (1.93) BS05 DUR 2.1.1.148 GO:0004799 ... Q9WYT0 27214228 MOAD: Kd=78uM
    112 5y5p:A (2.03) BS01 DUR 3.6.1.23 GO:0000287 ... Q77J78 29187596
    113 5y5p:B (2.03) BS02 DUR 3.6.1.23 GO:0000287 ... Q77J78 29187596
    114 5y5p:C (2.03) BS02 DUR 3.6.1.23 GO:0000287 ... Q77J78 29187596
    115 5y5p:D (2.03) BS01 DUR 3.6.1.23 GO:0000287 ... Q77J78 29187596
    116 5y5p:E (2.03) BS02 DUR 3.6.1.23 GO:0000287 ... Q77J78 29187596
    117 5y5p:F (2.03) BS01 DUR 3.6.1.23 GO:0000287 ... Q77J78 29187596
    118 6k5k:A (2.097) BS02 DUR 2.4.2.3 GO:0003824 ... A0A410UCT3 32493959
    119 6k5k:A (2.097) BS03 DUR 2.4.2.3 GO:0003824 ... A0A410UCT3 32493959
    120 6k5k:B (2.097) BS02 DUR 2.4.2.3 GO:0003824 ... A0A410UCT3 32493959
    121 6k5k:B (2.097) BS03 DUR 2.4.2.3 GO:0003824 ... A0A410UCT3 32493959
    122 6k5k:C (2.097) BS01 DUR 2.4.2.3 GO:0003824 ... A0A410UCT3 32493959
    123 6k5k:C (2.097) BS03 DUR 2.4.2.3 GO:0003824 ... A0A410UCT3 32493959
    124 6k5k:D (2.097) BS01 DUR 2.4.2.3 GO:0003824 ... A0A410UCT3 32493959
    125 6k5k:D (2.097) BS03 DUR 2.4.2.3 GO:0003824 ... A0A410UCT3 32493959
    126 6mjk:A (1.45) BS01 DUR 3.6.1.23 GO:0000287 ... A0A1Z0YU86 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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