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BioLiP
Download all results in tab-seperated text for 21 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ah5:A (2.4) BS01 DPM 2.5.1.61 GO:0004418 ... P06983 10089459
    2 1gtk:A (1.66) BS01 DPM 2.5.1.61 GO:0004418 ... P06983 12555854
    3 1pda:A (1.76) BS01 DPM 2.5.1.61 GO:0004418 ... P06983 1522882
    4 1ypn:A (2.3) BS01 DPM 2.5.1.61 GO:0004418 ... P06983 N/A
    5 2ypn:A (2.3) BS01 DPM 2.5.1.61 GO:0004418 ... P06983 N/A
    6 3ecr:A (2.182) BS01 DPM 2.5.1.61 GO:0004418 ... P08397 18936296
    7 3ecr:B (2.182) BS01 DPM 2.5.1.61 GO:0004418 ... P08397 18936296
    8 3eq1:A (2.8) BS01 DPM 2.5.1.61 GO:0004418 ... P08397 19207107
    9 3eq1:B (2.8) BS01 DPM 2.5.1.61 GO:0004418 ... P08397 19207107
    10 4mlq:A (1.6) BS01 DPM 2.5.1.61 GO:0004418 ... Q8GCA8 24598743
    11 4mlv:A (1.455) BS01 DPM 2.5.1.61 GO:0004418 ... Q8GCA8 24598743
    12 5h6o:A (2.702) BS01 DPM 2.5.1.61 GO:0004418 ... Q9KVM1 N/A
    13 5m7f:A (2.78) BS01 DPM 2.5.1.61 GO:0004418 ... P08397 29908816
    14 5m7f:B (2.78) BS01 DPM 2.5.1.61 GO:0004418 ... P08397 29908816
    15 5ov5:A (1.81) BS01 DPM 2.5.1.61 GO:0004418 ... Q8GCA8 29095155
    16 7aaj:A (1.8) BS01 DPM 2.5.1.61 GO:0004418 ... P08397 33665570
    17 7aaj:B (1.8) BS01 DPM 2.5.1.61 GO:0004418 ... P08397 33665570
    18 7ccx:A (1.84) BS01 DPM 2.5.1.61 GO:0004418 ... P08397 33600566
    19 7ccx:C (1.84) BS01 DPM 2.5.1.61 GO:0004418 ... P08397 33600566
    20 7ccy:A (2.4) BS01 DPM 2.5.1.61 GO:0004418 ... P08397 33600566
    21 7ccy:C (2.4) BS02 DPM 2.5.1.61 GO:0004418 ... P08397 33600566
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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