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BioLiP
Download all results in tab-seperated text for 22 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1lke:A (1.9) BS01 DOG ? GO:0000302 ... P09464 12823976 MOAD: Kd=30.2nM
    PDBbind: -logKd/Ki=7.52, Kd=30.2nM
    2 3ra7:H (2.798) BS01 DOG N/A N/A N/A 21536919
    3 3ra7:I (2.798) BS01 DOG N/A N/A N/A 21536919
    4 3ra7:M (2.798) BS01 DOG N/A N/A N/A 21536919
    5 4j8t:A (2.05) BS01 DOG ? N/A Q9HYR3 24005320 MOAD: Kd=168nM
    PDBbind: -logKd/Ki=6.77, Kd=168nM
    BindingDB: Kd=474nM
    6 4j8t:B (2.05) BS01 DOG ? N/A Q9HYR3 24005320 MOAD: Kd=168nM
    BindingDB: Kd=474nM
    7 4j8t:C (2.05) BS01 DOG ? N/A Q9HYR3 24005320 MOAD: Kd=168nM
    BindingDB: Kd=474nM
    8 4j8t:D (2.05) BS01 DOG ? N/A Q9HYR3 24005320 MOAD: Kd=168nM
    BindingDB: Kd=474nM
    9 4j9a:A (3.2) BS01 DOG ? N/A Q9HYR3 24005320 PDBbind: -logKd/Ki=8.22, Kd<6nM
    BindingDB: Kd=474nM
    10 4j9a:B (3.2) BS01 DOG ? N/A Q9HYR3 24005320 BindingDB: Kd=474nM
    11 4j9a:C (3.2) BS01 DOG ? N/A Q9HYR3 24005320 BindingDB: Kd=474nM
    12 4j9a:D (3.2) BS01 DOG ? N/A Q9HYR3 24005320 BindingDB: Kd=474nM
    13 4j9a:E (3.2) BS01 DOG ? N/A Q9HYR3 24005320 BindingDB: Kd=474nM
    14 4j9a:F (3.2) BS01 DOG ? N/A Q9HYR3 24005320 BindingDB: Kd=474nM
    15 4j9a:G (3.2) BS01 DOG ? N/A Q9HYR3 24005320 BindingDB: Kd=474nM
    16 4j9a:H (3.2) BS01 DOG ? N/A Q9HYR3 24005320 BindingDB: Kd=474nM
    17 4j9a:I (3.2) BS01 DOG ? N/A Q9HYR3 24005320 BindingDB: Kd=474nM
    18 5bvb:A (2.06) BS01 DOG N/A N/A N/A 26419257 MOAD: Kd=0.498uM
    19 5bvb:A (2.06) BS02 DOG N/A N/A N/A 26419257 MOAD: Kd=0.498uM
    20 5bvb:B (2.06) BS01 DOG N/A N/A N/A 26419257 MOAD: Kd=0.498uM
    21 5bvb:C (2.06) BS01 DOG N/A N/A N/A 26419257 MOAD: Kd=0.498uM
    22 5bvb:D (2.06) BS01 DOG N/A N/A N/A 26419257 MOAD: Kd=0.498uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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