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BioLiP
Download all results in tab-seperated text for 25 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1h87:A (1.72) BS01 DO3 3.2.1.17 GO:0003796 ... P00698 11752774
    2 2qmi:E (2.2) BS01 DO3 3.5.2.6 N/A Q9V2D6 19266066
    3 2qmi:F (2.2) BS01 DO3 3.5.2.6 N/A Q9V2D6 19266066
    4 2qmi:G (2.2) BS01 DO3 3.5.2.6 N/A Q9V2D6 19266066
    5 2qmi:H (2.2) BS01 DO3 3.5.2.6 N/A Q9V2D6 19266066
    6 4tws:A (1.45) BS01 DO3 3.2.1.17 GO:0003796 ... P00698 25040949
    7 5c6i:A (1.9) BS01 DO3 3.2.1.17 GO:0003796 ... P00698 26594370
    8 5c6j:A (2.1) BS01 DO3 3.2.1.17 GO:0003796 ... P00698 26594370
    9 5c6l:A (2.1) BS01 DO3 3.2.1.17 GO:0003796 ... P00698 26594370
    10 5npl:A (2.79) BS01 DO3 ? N/A A8YJ50 29915055
    11 5oer:A (1.9) BS01 DO3 3.2.1.17 GO:0003796 ... P00698 29079797
    12 6rq7:B (2.69) BS01 DO3 ? GO:0005515 ... P43652 31793901
    13 6rq7:B (2.69) BS02 DO3 ? GO:0005515 ... P43652 31793901
    14 6rq7:B (2.69) BS03 DO3 ? GO:0005515 ... P43652 31793901
    15 6sr0:A (2.3) BS01 DO3 3.2.1.17 GO:0003796 ... P00698 32286284
    16 6sr1:A (2.3) BS01 DO3 3.2.1.17 GO:0003796 ... P00698 32286284
    17 6sr2:A (2.3) BS01 DO3 3.2.1.17 GO:0003796 ... P00698 32286284
    18 6sr3:A (2.3) BS01 DO3 3.2.1.17 GO:0003796 ... P00698 32286284
    19 6sr4:A (2.3) BS01 DO3 3.2.1.17 GO:0003796 ... P00698 32286284
    20 6sr5:A (2.3) BS01 DO3 3.2.1.17 GO:0003796 ... P00698 32286284
    21 6yxf:A (3.025) BS02 DO3 ? GO:0016020 ... Q86V24 34723237
    22 6yxf:H (3.025) BS01 DO3 N/A N/A N/A 34723237
    23 8a9e:AAA (1.665) BS01 DO3 3.2.1.17 GO:0003796 ... P00698 N/A
    24 8rt2:A (0.8) BS01 DO3 3.2.1.17 GO:0003796 ... P00698 N/A
    25 8rt3:A (1.09) BS01 DO3 3.2.1.17 GO:0003796 ... P00698 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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