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BioLiP
Download all results in tab-seperated text for 10 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1d0s:A (1.9) BS02 DMD 2.4.2.21 GO:0000166 ... Q05603 10587435
    2 4d6s:A (1.4) BS02 DMD 1.14.11.66 N/A Q6B0I6 N/A
    3 4hdr:A (1.45) BS01 DMD 2.4.2.21 GO:0008939 ... F6MZ55 23039029
    4 4hdr:B (1.45) BS01 DMD 2.4.2.21 GO:0008939 ... F6MZ56 23039029
    5 4hdr:C (1.45) BS01 DMD 2.4.2.21 GO:0008939 ... F6MZ55 23039029
    6 4hdr:D (1.45) BS01 DMD 2.4.2.21 GO:0008939 ... F6MZ56 23039029
    7 4kqg:A (1.9) BS02 DMD 2.4.2.21 GO:0000166 ... Q05603 24121107
    8 5ph3:A (1.24) BS02 DMD 1.14.11.66 N/A Q6B0I6 28436492
    9 7cjg:A (2.0) BS01 DMD ? GO:0008270 ... Q7MT37 33823093
    10 7cjg:B (2.0) BS01 DMD ? GO:0008270 ... Q7MT37 33823093
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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