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BioLiP
Download all results in tab-seperated text for 43 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1n3i:A (1.9) BS02 DIH 6.3.2.1 GO:0003824 ... P9WIL5 12755607 MOAD: Kd=1.3nM
    PDBbind: -logKd/Ki=8.89, Ki=1.3nM
    2 1n3i:B (1.9) BS02 DIH 6.3.2.1 GO:0003824 ... P9WIL5 12755607 MOAD: Kd=1.3nM
    PDBbind: -logKd/Ki=8.89, Ki=1.3nM
    3 1n3i:C (1.9) BS02 DIH 6.3.2.1 GO:0003824 ... P9WIL5 12755607 MOAD: Kd=1.3nM
    4 1rsz:A (2.2) BS01 DIH 2.4.2.1 GO:0000255 ... P00491 N/A
    5 2a0w:A (2.28) BS01 DIH 2.4.2.1 GO:0000255 ... P00491 17407325 MOAD: Ki=270pM
    6 2a0x:A (2.28) BS01 DIH 2.4.2.1 GO:0000255 ... P00491 17407325 MOAD: Ki=950pM
    7 2a0y:A (2.28) BS01 DIH 2.4.2.1 GO:0000255 ... P00491 17407325 MOAD: Ki=900pM
    8 2p4s:A (2.2) BS02 DIH 2.4.2.1 GO:0003824 ... A4Q998 17918964 MOAD: Ki=0.31nM
    PDBbind: -logKd/Ki=9.51, Ki=0.31nM
    9 2p4s:B (2.2) BS02 DIH 2.4.2.1 GO:0003824 ... A4Q998 17918964 MOAD: Ki=0.31nM
    10 2p4s:C (2.2) BS02 DIH 2.4.2.1 GO:0003824 ... A4Q998 17918964 MOAD: Ki=0.31nM
    PDBbind: -logKd/Ki=9.51, Ki=0.31nM
    11 3bgs:A (2.099) BS01 DIH 2.4.2.1 GO:0000255 ... P00491 18154341 MOAD: Ki=380pM
    PDBbind: -logKd/Ki=9.42, Ki=380pM
    12 3occ:A (1.7) BS01 DIH 2.4.2.1 GO:0003824 ... B1JL34 N/A
    13 3occ:B (1.7) BS01 DIH 2.4.2.1 GO:0003824 ... B1JL34 N/A
    14 3occ:C (1.7) BS01 DIH 2.4.2.1 GO:0003824 ... B1JL34 N/A
    15 3occ:D (1.7) BS01 DIH 2.4.2.1 GO:0003824 ... B1JL34 N/A
    16 3occ:E (1.7) BS01 DIH 2.4.2.1 GO:0003824 ... B1JL34 N/A
    17 3occ:F (1.7) BS01 DIH 2.4.2.1 GO:0003824 ... B1JL34 N/A
    18 3occ:F (1.7) BS02 DIH 2.4.2.1 GO:0003824 ... B1JL34 N/A
    19 3of3:A (1.83) BS01 DIH 2.4.2.1 GO:0003824 ... Q9KPM0 N/A
    20 3of3:B (1.83) BS01 DIH 2.4.2.1 GO:0003824 ... Q9KPM0 N/A
    21 3of3:B (1.83) BS02 DIH 2.4.2.1 GO:0003824 ... Q9KPM0 N/A
    22 3of3:C (1.83) BS01 DIH 2.4.2.1 GO:0003824 ... Q9KPM0 N/A
    23 3of3:D (1.83) BS01 DIH 2.4.2.1 GO:0003824 ... Q9KPM0 N/A
    24 3of3:E (1.83) BS01 DIH 2.4.2.1 GO:0003824 ... Q9KPM0 N/A
    25 3of3:F (1.83) BS01 DIH 2.4.2.1 GO:0003824 ... Q9KPM0 N/A
    26 3of3:G (1.83) BS01 DIH 2.4.2.1 GO:0003824 ... Q9KPM0 N/A
    27 3of3:H (1.83) BS01 DIH 2.4.2.1 GO:0003824 ... Q9KPM0 N/A
    28 3of3:I (1.83) BS01 DIH 2.4.2.1 GO:0003824 ... Q9KPM0 N/A
    29 3of3:J (1.83) BS01 DIH 2.4.2.1 GO:0003824 ... Q9KPM0 N/A
    30 3of3:K (1.83) BS01 DIH 2.4.2.1 GO:0003824 ... Q9KPM0 N/A
    31 3of3:L (1.83) BS01 DIH 2.4.2.1 GO:0003824 ... Q9KPM0 N/A
    32 8pqr:A (1.586) BS01 DIH ? GO:0009159 ... K9TVX3 38449528
    33 8pqr:A (1.586) BS02 DIH ? GO:0009159 ... K9TVX3 38449528
    34 8pqr:B (1.586) BS01 DIH ? GO:0009159 ... K9TVX3 38449528
    35 8pqr:B (1.586) BS02 DIH ? GO:0009159 ... K9TVX3 38449528
    36 8pqr:C (1.586) BS01 DIH ? GO:0009159 ... K9TVX3 38449528
    37 8pqr:C (1.586) BS02 DIH ? GO:0009159 ... K9TVX3 38449528
    38 8pqr:D (1.586) BS01 DIH ? GO:0009159 ... K9TVX3 38449528
    39 8pqr:D (1.586) BS02 DIH ? GO:0009159 ... K9TVX3 38449528
    40 8swq:A (1.979) BS01 DIH 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    41 8swq:B (1.979) BS01 DIH 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    42 8swq:D (1.979) BS01 DIH 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    43 8swq:E (1.979) BS01 DIH 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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