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BioLiP
Download all results in tab-seperated text for 30 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1lcb:A (2.5) BS02 DHF 2.1.1.45 GO:0004799 ... P00469 8371269
    2 1mxh:A (2.2) BS02 DHF ? GO:0000166 ... Q8I814 16168672
    3 1mxh:B (2.2) BS02 DHF ? GO:0000166 ... Q8I814 16168672
    4 1mxh:C (2.2) BS02 DHF ? GO:0000166 ... Q8I814 16168672
    5 1mxh:D (2.2) BS02 DHF ? GO:0000166 ... Q8I814 16168672
    6 1rf7:A (1.8) BS01 DHF 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    7 1rf7:A (1.8) BS02 DHF 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    8 1tys:A (1.8) BS02 DHF 2.1.1.45 GO:0000287 ... P0A884 8312270 MOAD: Kd=3.27uM
    9 3dl5:A (2.74) BS02 DHF N/A GO:0004146 ... N/A 18672899
    10 3dl5:B (2.74) BS03 DHF N/A GO:0004146 ... N/A 18672899
    11 3dl5:C (2.74) BS02 DHF N/A GO:0004146 ... N/A 18672899
    12 3dl5:D (2.74) BS03 DHF N/A GO:0004146 ... N/A 18672899
    13 3dl5:E (2.74) BS02 DHF N/A GO:0004146 ... N/A 18672899
    14 3dl6:A (3.25) BS02 DHF N/A GO:0004146 ... N/A 18672899
    15 3dl6:B (3.25) BS03 DHF N/A GO:0004146 ... N/A 18672899
    16 3dl6:C (3.25) BS02 DHF N/A GO:0004146 ... N/A 18672899
    17 3dl6:D (3.25) BS03 DHF N/A GO:0004146 ... N/A 18672899
    18 3dl6:E (3.25) BS02 DHF N/A GO:0004146 ... N/A 18672899
    19 3frd:X (2.1) BS02 DHF 1.5.1.3 GO:0004146 ... P0A017 19211577
    20 4dpd:A (2.5) BS01 DHF 1.5.1.3
    2.1.1.45    		 GO:0000166 ... A7UD81 23035243
    21 4ez8:A (1.17) BS02 DHF 2.1.1.45 GO:0000900 ... P07607 N/A
    22 4pdj:A (1.599) BS02 DHF 1.5.1.3 GO:0004146 ... P0ABQ4 25453083
    23 6cxk:A (1.108) BS01 DHF 1.5.1.3 GO:0004146 ... P0ABQ4 30564747
    24 6cyv:A (1.3) BS02 DHF 1.5.1.3 GO:0004146 ... P0ABQ4 30564747
    25 6mt8:A (1.35) BS02 DHF 1.5.1.3 GO:0004146 ... P0ABQ4 30868089
    26 6mth:A (1.35) BS03 DHF 1.5.1.3 GO:0004146 ... P0ABQ4 30868089
    27 6nnd:A (1.7) BS03 DHF 1.5.1.3 GO:0004146 ... P9WNX1 31282477
    28 6nnd:B (1.7) BS02 DHF 1.5.1.3 GO:0004146 ... P9WNX1 31282477
    29 6pxh:A (2.3) BS01 DHF ? N/A K9N5Q8 31553909
    30 6pxh:B (2.3) BS01 DHF ? N/A K9N5Q8 31553909
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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