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BioLiP
Download all results in tab-seperated text for 56 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1aof:A (2.0) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 9311786
    2 1aof:B (2.0) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 9311786
    3 1aom:A (1.8) BS01 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 9311786
    4 1aom:B (1.8) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 9311786
    5 1aoq:A (1.8) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 9311786
    6 1aoq:B (1.8) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 9311786
    7 1bl9:A (2.9) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 9760233
    8 1bl9:B (2.9) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 9760233
    9 1dy7:A (1.6) BS01 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 10998233
    10 1dy7:B (1.6) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 10998233
    11 1e2r:A (1.59) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 10827177
    12 1e2r:B (1.59) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 10827177
    13 1gjq:A (2.7) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 11829453
    14 1gjq:B (2.7) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 11829453
    15 1gq1:A (1.4) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 12556530
    16 1gq1:B (1.4) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 12556530
    17 1h9x:A (2.1) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 11373294
    18 1h9x:B (2.1) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 11373294
    19 1h9y:A (2.4) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 11373294
    20 1h9y:B (2.4) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 11373294
    21 1hcm:A (2.5) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 11373294
    22 1hcm:B (2.5) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 11373294
    23 1hj3:A (1.6) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 11278884
    24 1hj3:B (1.6) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 11278884
    25 1hj4:A (1.6) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 11278884
    26 1hj4:B (1.6) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 11278884
    27 1hj5:A (1.46) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 11278884
    28 1hj5:B (1.46) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 11278884
    29 1hzu:A (2.7) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 11563915
    30 1hzv:A (2.83) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 11563915
    31 1n15:A (2.9) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 10329702
    32 1n15:B (2.9) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 10329702
    33 1n50:A (2.9) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 10329702
    34 1n50:B (2.9) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 10329702
    35 1n90:A (2.9) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 10329702
    36 1n90:B (2.9) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 10329702
    37 1nir:A (2.15) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 9331415
    38 1nir:B (2.15) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 9331415
    39 1nno:A (2.65) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 9760233
    40 1nno:B (2.65) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 9760233
    41 1qks:A (1.28) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 7736589
    42 1qks:B (1.28) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 7736589
    43 5guw:M (3.2) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 28847930
    44 5guw:N (3.2) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 28847930
    45 6rtd:A (2.36) BS01 DHE 1.3.-.- GO:0006783 ... Q9I609 31173777
    46 6rtd:B (2.36) BS02 DHE 1.3.-.- GO:0006783 ... Q9I609 31173777
    47 6tsi:A (2.38) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 32510465
    48 6tsi:B (2.38) BS02 DHE 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P24474 32510465
    49 6tv9:A (1.893) BS01 DHE ? GO:0005737 ... Q51480 32255259
    50 6tv9:B (1.893) BS01 DHE ? GO:0005737 ... Q51480 32255259
    51 6tv9:C (1.893) BS01 DHE ? GO:0005737 ... Q51480 32255259
    52 6tv9:D (1.893) BS01 DHE ? GO:0005737 ... Q51480 32255259
    53 6tv9:E (1.893) BS01 DHE ? GO:0005737 ... Q51480 32255259
    54 6tv9:F (1.893) BS01 DHE ? GO:0005737 ... Q51480 32255259
    55 6tv9:G (1.893) BS01 DHE ? GO:0005737 ... Q51480 32255259
    56 6tv9:H (1.893) BS01 DHE ? GO:0005737 ... Q51480 32255259
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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