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BioLiP
Download all results in tab-seperated text for 9 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1igj:A (2.5) BS01 DGX N/A N/A N/A 8234291
    2 1igj:B (2.5) BS01 DGX N/A N/A N/A 8234291 MOAD: Kd=0.1nM
    3 1igj:D (2.5) BS01 DGX N/A N/A N/A 8234291 MOAD: Kd=0.1nM
    PDBbind: -logKd/Ki=10.00, Kd=0.1nM
    4 3b0w:A (2.2) BS01 DGX ? GO:0003677 ... P51449 21733845 PDBbind: -logKd/Ki=5.70, IC50=2uM
    BindingDB: IC50=2000nM, Kd=109nM
    5 3b0w:B (2.2) BS01 DGX ? GO:0003677 ... P51449 21733845 BindingDB: IC50=2000nM, Kd=109nM
    6 4ret:A (4.0) BS07 DGX 7.2.2.13 GO:0000166 ... P05024 25624492 PDBbind: -logKd/Ki=7.59, Kd=26nM
    7 4ret:C (4.0) BS06 DGX 7.2.2.13 GO:0000166 ... P05024 25624492
    8 7ddh:A (3.46) BS05 DGX 7.2.2.13 GO:0000166 ... P05024 33318128
    9 7ddh:C (3.46) BS05 DGX 7.2.2.13 GO:0000166 ... P05024 33318128
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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