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BioLiP
Download all results in tab-seperated text for 668 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 8i0h:A (3.4) BS04 DGT N/A N/A Q9VUL1 N/A
    602 8icv:A (3.2) BS04 DGT 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    603 8om1:O (2.39) BS01 DGT ? GO:0005739 ... Q99LC3 37531432
    604 8p39:A (2.58) BS01 DGT 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    605 8p39:A (2.58) BS02 DGT 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    606 8p39:B (2.58) BS01 DGT 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    607 8p39:B (2.58) BS02 DGT 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    608 8pw5:O1 (3.6) BS01 DGT ? GO:0005739 ... Q99LC3 38575788
    609 8pw6:O1 (3.3) BS01 DGT ? GO:0005739 ... Q99LC3 38575788
    610 8pw7:O1 (3.5) BS01 DGT ? GO:0005739 ... Q99LC3 38575788
    611 8q0a:O (3.1) BS01 DGT ? GO:0005737 ... P34942 38870289
    612 8q0f:O (3.1) BS01 DGT ? GO:0005737 ... P34942 38870289
    613 8q0j:O (3.8) BS01 DGT ? GO:0005737 ... P34942 38870289
    614 8q0m:O (3.1) BS01 DGT ? GO:0005737 ... P34942 38870289
    615 8q0o:O (3.1) BS01 DGT ? GO:0005737 ... P34942 38870289
    616 8q0q:O (3.6) BS01 DGT ? GO:0005737 ... P34942 38870289
    617 8q1p:O (2.9) BS01 DGT ? GO:0005737 ... P34942 38870289
    618 8q1u:O (3.3) BS01 DGT ? GO:0005737 ... P34942 38870289
    619 8q1y:O (2.6) BS01 DGT ? GO:0005737 ... P34942 38870289
    620 8q25:O (2.8) BS01 DGT ? GO:0005737 ... P34942 38870289
    621 8q45:O (2.7) BS01 DGT ? GO:0005737 ... P34942 38870289
    622 8q46:O (2.6) BS01 DGT ? GO:0005737 ... P34942 38870289
    623 8q47:O (2.9) BS01 DGT ? GO:0005737 ... P34942 38870289
    624 8q48:O (2.5) BS01 DGT ? GO:0005737 ... P34942 38870289
    625 8q49:O (2.6) BS01 DGT ? GO:0005737 ... P34942 38870289
    626 8q4a:O (2.6) BS01 DGT ? GO:0005737 ... P34942 38870289
    627 8rgp:O (3.0) BS01 DGT ? GO:0005739 ... Q99LC3 38575788
    628 8rgq:O (3.0) BS01 DGT ? GO:0005739 ... Q99LC3 38575788
    629 8rgr:O (2.9) BS01 DGT ? GO:0005739 ... Q99LC3 38575788
    630 8rgt:O (3.1) BS01 DGT ? GO:0005739 ... Q99LC3 38575788
    631 8scg:A (2.0) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    632 8scg:D (2.0) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    633 8sci:A (2.67) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    634 8sci:D (2.67) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    635 8scj:A (2.68) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    636 8scj:D (2.68) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    637 8sck:A (2.3) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    638 8sck:D (2.3) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    639 8scl:A (2.44) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    640 8scl:D (2.44) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    641 8scm:A (2.3) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    642 8scm:D (2.3) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    643 8sco:A (1.92) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    644 8sco:D (1.92) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    645 8scp:A (2.08) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    646 8scp:D (2.08) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    647 8scq:A (2.18) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    648 8scq:D (2.18) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    649 8scr:A (2.0) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    650 8scr:D (2.0) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    651 8scs:A (2.1) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    652 8scs:D (2.1) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    653 8sct:A (2.34) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    654 8sct:D (2.34) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    655 8scu:D (2.38) BS03 DGT 2.7.7.7 GO:0000166 ... D9N168 37883544
    656 8sj2:A (2.23) BS05 DGT 2.7.7.86 N/A Q8C6L5 38740774
    657 8sj2:C (2.23) BS05 DGT 2.7.7.86 N/A Q8C6L5 38740774
    658 8ucu:A (2.85) BS03 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    659 8ucv:A (3.81) BS03 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    660 8ucw:A (3.64) BS03 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    661 8v6g:A (11.16) BS05 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    662 8v6h:A (11.11) BS05 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    663 8v6i:A (14.06) BS05 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    664 8v6j:A (11.11) BS05 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    665 8x22:A (2.31) BS02 DGT N/A N/A P12497 38977798
    666 8x22:C (2.31) BS02 DGT N/A N/A P12497 38977798
    667 9ich:A (2.9) BS04 DGT 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    668 9ict:A (3.0) BS04 DGT 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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