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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 162 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1d0k:A (2.02) BS04 DGL 4.2.2.n1 GO:0005509 ... P41052 10684641
    2 1d0k:A (2.02) BS06 DGL 4.2.2.n1 GO:0005509 ... P41052 10684641
    3 1kr6:A (1.8) BS06 DGL 3.4.24.27 GO:0004222 ... P00800 N/A
    4 1zuw:A (1.75) BS01 DGL 5.1.1.3 GO:0008360 ... P94556 16271894
    5 1zuw:B (1.75) BS01 DGL 5.1.1.3 GO:0008360 ... P94556 16271894
    6 1zuw:C (1.75) BS01 DGL 5.1.1.3 GO:0008360 ... P94556 16271894
    7 2dwu:A (1.6) BS01 DGL 5.1.1.3 GO:0008360 ... A0A6L8PVU3 17610893
    8 2dwu:B (1.6) BS01 DGL 5.1.1.3 GO:0008360 ... A0A6L8PVU3 17610893
    9 2dwu:C (1.6) BS01 DGL 5.1.1.3 GO:0008360 ... A0A6L8PVU3 17610893
    10 2gzm:A (1.99) BS01 DGL 5.1.1.3 GO:0008360 ... A0A6L8PKK6 17610893
    11 2gzm:B (1.99) BS01 DGL 5.1.1.3 GO:0008360 ... A0A6L8PKK6 17610893
    12 2gzm:C (1.99) BS01 DGL 5.1.1.3 GO:0008360 ... A0A6L8PKK6 17610893
    13 2gzm:D (1.99) BS01 DGL 5.1.1.3 GO:0008360 ... A0A6L8PKK6 17610893
    14 2j8f:A (1.84) BS03 DGL 3.2.1.17 GO:0003796 ... P15057 17581815
    15 2j8g:A (1.69) BS02 DGL 3.2.1.17 GO:0003796 ... P15057 17581815
    16 2jfo:B (2.5) BS01 DGL 5.1.1.3 GO:0008360 ... Q836J0 17568739
    17 2jfp:A (1.98) BS01 DGL 5.1.1.3 GO:0008360 ... Q836J0 17568739
    18 2jfp:B (1.98) BS01 DGL 5.1.1.3 GO:0008360 ... Q836J0 17568739
    19 2jfq:A (2.15) BS01 DGL 5.1.1.3 GO:0008360 ... Q6GHT5 17568739
    20 2jfq:B (2.15) BS01 DGL 5.1.1.3 GO:0008360 ... Q6GHT5 17568739
    21 2jfq:B (2.15) BS02 DGL 5.1.1.3 GO:0008360 ... Q6GHT5 17568739
    22 2jfx:A (2.3) BS01 DGL 5.1.1.3 GO:0008360 ... Q9ZLT0 17568739
    23 2jfx:B (2.3) BS01 DGL 5.1.1.3 GO:0008360 ... Q9ZLT0 17568739
    24 2jfy:A (1.9) BS01 DGL 5.1.1.3 GO:0008360 ... Q9ZLT0 17568739
    25 2jfy:B (1.9) BS01 DGL 5.1.1.3 GO:0008360 ... Q9ZLT0 17568739
    26 2jfz:A (1.86) BS02 DGL 5.1.1.3 GO:0008360 ... Q9ZLT0 17568739
    27 2jfz:B (1.86) BS02 DGL 5.1.1.3 GO:0008360 ... Q9ZLT0 17568739
    28 2vvt:A (1.65) BS02 DGL 5.1.1.3 GO:0008360 ... Q836J0 18614367
    29 2vvt:B (1.65) BS02 DGL 5.1.1.3 GO:0008360 ... Q836J0 18614367
    30 2w4i:A (1.87) BS01 DGL 5.1.1.3 GO:0008360 ... Q9ZLT0 19097892
    31 2w4i:B (1.87) BS01 DGL 5.1.1.3 GO:0008360 ... Q9ZLT0 19097892
    32 2w4i:E (1.87) BS01 DGL 5.1.1.3 GO:0008360 ... Q9ZLT0 19097892
    33 2w4i:F (1.87) BS02 DGL 5.1.1.3 GO:0008360 ... Q9ZLT0 19097892
    34 3h41:A (1.79) BS02 DGL 3.4.14.13 GO:0006508 ... Q736M3 20944232
    35 3iji:A (1.6) BS02 DGL 5.1.1.20 GO:0016855 ... Q8A861 22392983
    36 3iji:B (1.6) BS02 DGL 5.1.1.20 GO:0016855 ... Q8A861 22392983
    37 3ijl:A (1.5) BS02 DGL 5.1.1.20 GO:0016855 ... Q8A861 22392983
    38 3ijl:B (1.5) BS02 DGL 5.1.1.20 GO:0016855 ... Q8A861 22392983
    39 3ijq:A (2.0) BS02 DGL 5.1.1.20 GO:0016855 ... Q8A861 22392983
    40 3ijq:B (2.0) BS02 DGL 5.1.1.20 GO:0016855 ... Q8A861 22392983
    41 3kob:B (2.99) BS01 DGL 3.1.1.96 GO:0000049 ... Q8IIS0 20007323
    42 3oel:A (1.9) BS01 DGL ? GO:0015276 ... Q62645 21522138
    43 3out:A (1.65) BS01 DGL 5.1.1.3 GO:0008360 ... Q5NFN6 N/A
    44 3out:B (1.65) BS01 DGL 5.1.1.3 GO:0008360 ... Q5NFN6 N/A
    45 3out:C (1.65) BS01 DGL 5.1.1.3 GO:0008360 ... Q5NFN6 N/A
    46 3qv4:C (2.7) BS01 DGL ? GO:0001818 ... Q9GK12 N/A
    47 3r1z:B (1.9) BS02 DGL 5.1.1.- GO:0000287 ... B0TZW0 22392983
    48 3tur:A (1.72) BS04 DGL 2.3.2.- GO:0016740 ... O53223 23103390
    49 3uhf:A (1.83) BS01 DGL 5.1.1.3 GO:0008360 ... Q9PM24 N/A
    50 3uhf:B (1.83) BS01 DGL 5.1.1.3 GO:0008360 ... Q9PM24 N/A
    51 3uho:A (2.2) BS01 DGL 5.1.1.3 GO:0008360 ... Q9PM24 N/A
    52 3uho:B (2.2) BS01 DGL 5.1.1.3 GO:0008360 ... Q9PM24 N/A
    53 4b1f:A (2.05) BS02 DGL 5.1.1.3 GO:0008360 ... Q9ZLT0 22877632
    54 4b1f:B (2.05) BS01 DGL 5.1.1.3 GO:0008360 ... Q9ZLT0 22877632
    55 4l8w:G (2.39) BS02 DGL 3.4.19.9 GO:0008242 ... Q6NY42 24028568
    56 4l8w:G (2.39) BS03 DGL 3.4.19.9 GO:0008242 ... Q6NY42 24028568
    57 4l8w:I (2.39) BS02 DGL 3.4.19.9 GO:0008242 ... Q6NY42 24028568
    58 4l8w:I (2.39) BS03 DGL 3.4.19.9 GO:0008242 ... Q6NY42 24028568
    59 4nz6:B (2.0) BS01 DGL 5.4.99.-
    5.4.99.12    		 GO:0001522 ... Q9Y606 24722331
    60 5hj7:A (2.3) BS01 DGL 5.1.1.3 GO:0005515 ... P9WPW9 26964898
    61 5hj7:B (2.3) BS01 DGL 5.1.1.3 GO:0005515 ... P9WPW9 26964898
    62 5ijw:A (1.76) BS01 DGL 5.1.1.3 GO:0008360 ... A0R1X0 26964898
    63 5ijw:B (1.76) BS01 DGL 5.1.1.3 GO:0008360 ... A0R1X0 26964898
    64 5ne2:A (1.19) BS01 DGL 3.5.2.6 GO:0008800 ... Q9RBQ1 28876489 MOAD: Ki=84pM
    65 5ne2:B (1.19) BS01 DGL 3.5.2.6 GO:0008800 ... Q9RBQ1 28876489 MOAD: Ki=84pM
    66 5w16:A (1.909) BS01 DGL 5.1.1.3 GO:0008881 ... A0A1J1ER74 N/A
    67 5w16:B (1.909) BS01 DGL 5.1.1.3 GO:0008881 ... A0A1J1ER74 N/A
    68 5w16:C (1.909) BS01 DGL 5.1.1.3 GO:0008881 ... A0A1J1ER74 N/A
    69 5w16:D (1.909) BS01 DGL 5.1.1.3 GO:0008881 ... A0A1J1ER74 N/A
    70 5w1q:A (1.95) BS01 DGL 5.1.1.3 GO:0008360 ... K2K6A3 N/A
    71 5w1q:B (1.95) BS01 DGL 5.1.1.3 GO:0008360 ... K2K6A3 N/A
    72 5xni:A (3.22) BS01 DGL ? GO:0016853 ... Q9RNB4 N/A
    73 6g7n:A (1.1) BS02 DGL ? GO:0006826 ... Q10Z45 30217820
    74 6g7n:B (1.1) BS02 DGL ? GO:0006826 ... Q10Z45 30217820
    75 6s6y:B (3.1) BS02 DGL N/A N/A N/A 31776258
    76 6s6y:I (3.1) BS04 DGL N/A GO:0016810 ... N/A 31776258
    77 6s6y:K (3.1) BS03 DGL N/A GO:0015948 ... N/A 31776258
    78 6s6y:L (3.1) BS02 DGL N/A GO:0006730 ... N/A 31776258
    79 6s6y:L (3.1) BS03 DGL N/A GO:0006730 ... N/A 31776258
    80 6s6y:P (3.1) BS01 DGL N/A GO:0006730 ... N/A 31776258
    81 6wyz:A (1.7) BS01 DGL 3.5.1.38 GO:0004067 ... Q88K39 N/A
    82 6wyz:B (1.7) BS01 DGL 3.5.1.38 GO:0004067 ... Q88K39 N/A
    83 6wyz:C (1.7) BS01 DGL 3.5.1.38 GO:0004067 ... Q88K39 N/A
    84 6wyz:D (1.7) BS01 DGL 3.5.1.38 GO:0004067 ... Q88K39 N/A
    85 7fsg:B (2.02) BS01 DGL ? N/A O00560 N/A
    86 7fsg:D (2.02) BS03 DGL ? N/A O00560 N/A
    87 7fsh:B (2.11) BS01 DGL ? N/A O00560 N/A
    88 7fsh:D (2.11) BS04 DGL ? N/A O00560 N/A
    89 7fsi:B (2.31) BS01 DGL ? N/A O00560 N/A
    90 7fsi:D (2.31) BS02 DGL ? N/A O00560 N/A
    91 7fsj:B (1.97) BS01 DGL ? N/A O00560 N/A
    92 7fsj:D (1.97) BS02 DGL ? N/A O00560 N/A
    93 7fsk:B (2.4) BS01 DGL ? N/A O00560 N/A
    94 7fsk:D (2.4) BS02 DGL ? N/A O00560 N/A
    95 7fsl:B (2.38) BS02 DGL ? N/A O00560 N/A
    96 7fsl:D (2.38) BS02 DGL ? N/A O00560 N/A
    97 7fsm:B (2.1) BS02 DGL ? N/A O00560 N/A
    98 7fsm:D (2.1) BS02 DGL ? N/A O00560 N/A
    99 7fsn:B (2.4) BS01 DGL ? N/A O00560 N/A
    100 7fsn:D (2.4) BS02 DGL ? N/A O00560 N/A
    101 7fso:B (1.9) BS01 DGL ? N/A O00560 N/A
    102 7fso:D (1.9) BS02 DGL ? N/A O00560 N/A
    103 7fsp:B (1.86) BS01 DGL ? N/A O00560 N/A
    104 7fsp:D (1.86) BS03 DGL ? N/A O00560 N/A
    105 7fsq:B (2.07) BS03 DGL ? N/A O00560 N/A
    106 7fsq:D (2.07) BS02 DGL ? N/A O00560 N/A
    107 7fsr:B (2.29) BS01 DGL ? N/A O00560 N/A
    108 7fsr:D (2.29) BS03 DGL ? N/A O00560 N/A
    109 7fss:B (2.11) BS02 DGL ? N/A O00560 N/A
    110 7fss:D (2.11) BS02 DGL ? N/A O00560 N/A
    111 7fst:B (1.98) BS01 DGL ? N/A O00560 N/A
    112 7fst:D (1.98) BS02 DGL ? N/A O00560 N/A
    113 7fsu:B (1.97) BS01 DGL ? N/A O00560 N/A
    114 7fsu:D (1.97) BS03 DGL ? N/A O00560 N/A
    115 7fsv:B (2.25) BS02 DGL ? N/A O00560 N/A
    116 7fsv:D (2.25) BS03 DGL ? N/A O00560 N/A
    117 7fsw:B (2.14) BS01 DGL ? N/A O00560 N/A
    118 7fsw:D (2.14) BS02 DGL ? N/A O00560 N/A
    119 7fsx:B (1.91) BS02 DGL ? N/A O00560 N/A
    120 7fsx:D (1.91) BS02 DGL ? N/A O00560 N/A
    121 7fsy:B (2.8) BS02 DGL ? N/A O00560 N/A
    122 7fsy:D (2.8) BS02 DGL ? N/A O00560 N/A
    123 7fsz:B (2.05) BS01 DGL ? N/A O00560 N/A
    124 7ft0:B (2.45) BS01 DGL ? N/A O00560 N/A
    125 7ft0:D (2.45) BS01 DGL ? N/A O00560 N/A
    126 7ft1:B (2.11) BS01 DGL ? N/A O00560 N/A
    127 7ft1:D (2.11) BS03 DGL ? N/A O00560 N/A
    128 7ft2:B (2.04) BS01 DGL ? N/A O00560 N/A
    129 7ft2:D (2.04) BS03 DGL ? N/A O00560 N/A
    130 7ft3:B (2.05) BS02 DGL ? N/A O00560 N/A
    131 7ft3:D (2.05) BS03 DGL ? N/A O00560 N/A
    132 7ft4:B (2.17) BS02 DGL ? N/A O00560 N/A
    133 7ft4:D (2.17) BS02 DGL ? N/A O00560 N/A
    134 7ft5:B (1.77) BS01 DGL ? N/A O00560 N/A
    135 7ft5:D (1.77) BS02 DGL ? N/A O00560 N/A
    136 7ft6:B (1.85) BS01 DGL ? N/A O00560 N/A
    137 7ft6:D (1.85) BS03 DGL ? N/A O00560 N/A
    138 7ft7:B (1.78) BS03 DGL ? N/A O00560 N/A
    139 7ft7:D (1.78) BS04 DGL ? N/A O00560 N/A
    140 7ft8:B (2.4) BS01 DGL ? N/A O00560 N/A
    141 7ft8:D (2.4) BS03 DGL ? N/A O00560 N/A
    142 7ft9:B (1.77) BS01 DGL ? N/A O00560 N/A
    143 7ft9:D (1.77) BS02 DGL ? N/A O00560 N/A
    144 7fta:B (2.03) BS01 DGL ? N/A O00560 N/A
    145 7fta:D (2.03) BS02 DGL ? N/A O00560 N/A
    146 7ftb:B (2.22) BS02 DGL ? N/A O00560 N/A
    147 7ftb:D (2.22) BS01 DGL ? N/A O00560 N/A
    148 7ftc:B (1.87) BS01 DGL ? N/A O00560 N/A
    149 7ftc:D (1.87) BS04 DGL ? N/A O00560 N/A
    150 7ftd:B (1.8) BS01 DGL ? N/A O00560 N/A
    151 7ftd:D (1.8) BS02 DGL ? N/A O00560 N/A
    152 7kem:A (1.77) BS04 DGL 2.3.2.- GO:0016740 ... I6Y9J2 N/A
    153 7uj5:A (1.75) BS01 DGL 5.1.1.3 GO:0008360 ... K2K6A3 N/A
    154 7uj5:B (1.75) BS01 DGL 5.1.1.3 GO:0008360 ... K2K6A3 N/A
    155 7uj5:C (1.75) BS01 DGL 5.1.1.3 GO:0008360 ... K2K6A3 N/A
    156 7uj5:D (1.75) BS01 DGL 5.1.1.3 GO:0008360 ... K2K6A3 N/A
    157 8blu:B (1.5) BS01 DGL ? N/A O00560 N/A
    158 8blu:D (1.5) BS02 DGL ? N/A O00560 N/A
    159 8eb3:A (2.2) BS02 DGL 5.1.1.3 GO:0008360 ... K2K6A3 N/A
    160 8eb3:B (2.2) BS02 DGL 5.1.1.3 GO:0008360 ... K2K6A3 N/A
    161 8tba:A (1.65) BS02 DGL N/A GO:0008360 ... Q9ZLT0 N/A
    162 8tba:B (1.65) BS01 DGL N/A GO:0008360 ... Q9ZLT0 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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