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BioLiP
Download all results in tab-seperated text for 57 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1jxl:A (2.1) BS07 DG3 2.7.7.7 GO:0000287 ... Q97W02 11595188
    2 1qss:A (2.3) BS05 DG3 2.7.7.7 GO:0001882 ... P19821 10449720
    3 1t7p:A (2.2) BS03 DG3 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P00581 9440688
    4 3au6:A (3.3) BS02 DG3 2.7.7.7
    4.2.99.18    		 GO:0003677 ... Q5SJ64 22306405 PDBbind: -logKd/Ki=7.92, Kd=12nM
    5 3auo:A (2.7) BS02 DG3 2.7.7.7
    4.2.99.18    		 GO:0003677 ... Q5SJ64 22306405
    6 3auo:B (2.7) BS02 DG3 2.7.7.7
    4.2.99.18    		 GO:0003677 ... Q5SJ64 22306405
    7 3bq1:A (2.7) BS03 DG3 2.7.7.7 GO:0000287 ... Q4JB80 18374650
    8 3k5m:A (2.04) BS03 DG3 2.7.7.7 GO:0000166 ... P21189 20064374
    9 3rr8:A (2.4) BS03 DG3 2.7.7.7 GO:0001882 ... P19821 22318723
    10 3rrg:A (2.3) BS03 DG3 2.7.7.7 GO:0001882 ... P19821 22318723
    11 3ti0:A (1.62) BS03 DG3 N/A GO:0003676 ... N/A 22006298
    12 3ti0:D (1.62) BS03 DG3 N/A GO:0003676 ... N/A 22006298
    13 4ez6:A (1.64) BS03 DG3 2.7.7.7 GO:0003676 ... Q5KWC1 N/A
    14 4ez6:D (1.64) BS03 DG3 2.7.7.7 GO:0003676 ... Q5KWC1 N/A
    15 4f4k:D (1.6) BS03 DG3 2.7.7.7 GO:0003676 ... Q5KWC1 N/A
    16 4x0q:A (3.9) BS05 DG3 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 25775267
    17 4x0q:B (3.9) BS05 DG3 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 25775267
    18 5ao0:A (3.731) BS02 DG3 3.1.5.- N/A Q9Y3Z3 26431200
    19 5ao0:A (3.731) BS03 DG3 3.1.5.- N/A Q9Y3Z3 26431200
    20 5ao0:A (3.731) BS04 DG3 3.1.5.- N/A Q9Y3Z3 26431200
    21 5ao0:B (3.731) BS01 DG3 3.1.5.- N/A Q9Y3Z3 26431200
    22 5ao0:B (3.731) BS03 DG3 3.1.5.- N/A Q9Y3Z3 26431200
    23 5ao0:B (3.731) BS04 DG3 3.1.5.- N/A Q9Y3Z3 26431200
    24 5ao1:A (2.545) BS02 DG3 3.1.5.- N/A Q9Y3Z3 26431200
    25 5ao1:A (2.545) BS03 DG3 3.1.5.- N/A Q9Y3Z3 26431200
    26 5ao1:A (2.545) BS04 DG3 3.1.5.- N/A Q9Y3Z3 26431200
    27 5ao1:B (2.545) BS01 DG3 3.1.5.- N/A Q9Y3Z3 26431200
    28 5ao1:B (2.545) BS03 DG3 3.1.5.- N/A Q9Y3Z3 26431200
    29 5ao1:B (2.545) BS04 DG3 3.1.5.- N/A Q9Y3Z3 26431200
    30 5ao1:C (2.545) BS02 DG3 3.1.5.- N/A Q9Y3Z3 26431200
    31 5ao1:C (2.545) BS03 DG3 3.1.5.- N/A Q9Y3Z3 26431200
    32 5ao1:C (2.545) BS04 DG3 3.1.5.- N/A Q9Y3Z3 26431200
    33 5ao1:D (2.545) BS01 DG3 3.1.5.- N/A Q9Y3Z3 26431200
    34 5ao1:D (2.545) BS03 DG3 3.1.5.- N/A Q9Y3Z3 26431200
    35 5ao1:D (2.545) BS04 DG3 3.1.5.- N/A Q9Y3Z3 26431200
    36 6uu7:DDD (4.4) BS06 DG3 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    37 6xbu:A (3.29) BS03 DG3 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 34117057
    38 7zus:AAA (2.26) BS03 DG3 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 36200480
    39 7zus:BBB (2.26) BS03 DG3 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 36200480
    40 7zus:CCC (2.26) BS03 DG3 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 36200480
    41 7zx0:AAA (2.99) BS03 DG3 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 36200480
    42 7zx0:BBB (2.99) BS04 DG3 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 36200480
    43 7zx0:CCC (2.99) BS04 DG3 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 36200480
    44 7zx0:DDD (2.99) BS04 DG3 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 36200480
    45 7zx0:EEE (2.99) BS04 DG3 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 36200480
    46 7zx0:FFF (2.99) BS04 DG3 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 36200480
    47 7zx1:AAA (2.829) BS03 DG3 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 36200480
    48 7zx1:BBB (2.829) BS04 DG3 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 36200480
    49 7zx1:CCC (2.829) BS05 DG3 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 36200480
    50 7zx1:DDD (2.829) BS04 DG3 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 36200480
    51 7zx1:EEE (2.829) BS04 DG3 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 36200480
    52 7zx1:FFF (2.829) BS04 DG3 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 36200480
    53 8e23:A (2.59) BS03 DG3 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 36126059
    54 8e23:D (2.59) BS03 DG3 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 36126059
    55 8e24:A (2.34) BS03 DG3 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 36126059
    56 8e24:D (2.34) BS03 DG3 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 36126059
    57 8gd7:A (3.24) BS04 DG3 N/A N/A O75417 38580648
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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