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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1at3:A (2.5) BS01 DFP 3.4.21.97 GO:0004252 ... Q69527 9369473
    2 1at3:B (2.5) BS01 DFP 3.4.21.97 GO:0004252 ... Q69527 9369473
    3 1ci9:A (1.8) BS01 DFP 3.1.1.- GO:0005737 ... Q9KX40 11847270
    4 1ci9:B (1.8) BS01 DFP 3.1.1.- GO:0005737 ... Q9KX40 11847270
    5 1dfp:A (2.4) BS01 DFP 3.4.21.46 GO:0004252 ... P00746 15299948
    6 1dfp:B (2.4) BS01 DFP 3.4.21.46 GO:0004252 ... P00746 15299948
    7 1dui:A (2.0) BS01 DFP 3.4.21.62 GO:0004252 ... P00782 N/A
    8 1p8v:C (2.6) BS02 DFP 3.4.21.5 GO:0004252 ... P00734 12855811
    9 1rs0:A (2.6) BS02 DFP 3.4.21.47 GO:0004252 ... P00751 15068800
    10 1sue:A (1.8) BS01 DFP 3.4.21.62 GO:0004252 ... P00782 N/A
    11 1tkr:A (2.7) BS01 DFP 3.4.14.5 GO:0001618 ... P27487 15175333
    12 1tkr:B (2.7) BS01 DFP 3.4.14.5 GO:0001618 ... P27487 15175333
    13 1xzk:A (2.01) BS01 DFP 3.1.1.74 GO:0005576 ... P00590 8990497
    14 1xzk:B (2.01) BS01 DFP 3.1.1.74 GO:0005576 ... P00590 8990497
    15 2gzs:A (1.4) BS01 DFP ? GO:0016788 ... Q6KD95 16922493
    16 2tgd:A (2.1) BS02 DFP 3.4.21.4 GO:0004175 ... P00760 N/A
    17 3f9c:A (2.3) BS01 DFP 3.1.1.47 GO:0003847 ... Q13093 19394314
    18 3f9c:B (2.3) BS01 DFP 3.1.1.47 GO:0003847 ... Q13093 19394314
    19 3mh5:A (3.0) BS01 DFP 3.4.21.107 GO:0004175 ... P0C0V0 20581825
    20 3mh5:B (3.0) BS01 DFP 3.4.21.107 GO:0004175 ... P0C0V0 20581825
    21 3mh6:A (3.6) BS01 DFP 3.4.21.107 GO:0004175 ... P0C0V0 20581825
    22 3tt7:A (2.558) BS01 DFP 3.4.21.92 GO:0004176 ... P80244 22080375
    23 3tt7:B (2.558) BS01 DFP 3.4.21.92 GO:0004176 ... P80244 22080375
    24 3tt7:C (2.558) BS01 DFP 3.4.21.92 GO:0004176 ... P80244 22080375
    25 3tt7:D (2.558) BS01 DFP 3.4.21.92 GO:0004176 ... P80244 22080375
    26 3tt7:E (2.558) BS01 DFP 3.4.21.92 GO:0004176 ... P80244 22080375
    27 3tt7:F (2.558) BS01 DFP 3.4.21.92 GO:0004176 ... P80244 22080375
    28 3tt7:G (2.558) BS01 DFP 3.4.21.92 GO:0004176 ... P80244 22080375
    29 3txt:A (2.3) BS01 DFP 3.4.21.105 GO:0004252 ... P09391 N/A
    30 3vta:A (2.75) BS01 DFP 3.4.21.25 GO:0004252 ... Q39547 22841692
    31 3vta:B (2.75) BS01 DFP 3.4.21.25 GO:0004252 ... Q39547 22841692
    32 4h1d:A (2.8975) BS01 DFP 3.4.21.105 GO:0004252 ... P09391 23609444
    33 4v08:A (2.03) BS01 DFP 3.4.21.97 GO:0004252 ... Q83417 26161660
    34 4v08:B (2.03) BS01 DFP 3.4.21.97 GO:0004252 ... Q83417 26161660
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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