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BioLiP
Download all results in tab-seperated text for 14 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1s9p:A (2.13) BS01 DES ? N/A P62509 15161930
    2 1s9p:B (2.13) BS01 DES ? N/A P62509 15161930
    3 1s9p:C (2.13) BS01 DES ? N/A P62509 15161930
    4 1s9p:D (2.13) BS01 DES ? N/A P62509 15161930
    5 1tt6:A (1.8) BS01 DES ? GO:0005179 ... P02766 15469931
    6 1tt6:B (1.8) BS01 DES ? GO:0005179 ... P02766 15469931
    7 1tz8:A (1.85) BS01 DES ? GO:0005179 ... P02766 15469931
    8 1tz8:B (1.85) BS01 DES ? GO:0005179 ... P02766 15469931
    9 1tz8:C (1.85) BS01 DES ? GO:0005179 ... P02766 15469931
    10 1tz8:D (1.85) BS01 DES ? GO:0005179 ... P02766 15469931
    11 3erd:A (2.03) BS02 DES ? N/A P03372 9875847 PDBbind: -logKd/Ki=9.90, Ki=0.126nM
    BindingDB: Ki=0.128000nM, IC50=0.330000nM, EC50=0.110000nM
    12 3erd:B (2.03) BS03 DES ? N/A P03372 9875847 BindingDB: Ki=0.128000nM, IC50=0.330000nM, EC50=0.110000nM
    13 4zn7:A (1.934) BS02 DES ? N/A P03372 27107013 BindingDB: Ki=0.128000nM, IC50=0.330000nM, EC50=0.110000nM
    14 4zn7:B (1.934) BS02 DES ? N/A P03372 27107013 BindingDB: Ki=0.128000nM, IC50=0.330000nM, EC50=0.110000nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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