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BioLiP
Download all results in tab-seperated text for 283 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 5wm8:A (1.92) BS06 DCP 2.7.7.- GO:0003684 ... P12689 29042535
    202 5wmb:A (2.25) BS06 DCP 2.7.7.- GO:0003684 ... P12689 29042535
    203 5zrk:A (1.49) BS01 DCP 3.6.1.55 GO:0000166 ... A0R2K6 30312643
    204 5zrk:B (1.49) BS01 DCP 3.6.1.55 GO:0000166 ... A0R2K6 30312643
    205 6as7:A (2.95) BS03 DCP 2.7.7.7 GO:0000166 ... P09884 29555682
    206 6ctq:A (1.87) BS05 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 29874056
    207 6ipi:A (1.8) BS03 DCP 2.7.7.7 GO:0003677 ... Q9NP87 31067051 MOAD: Kd=1.95uM
    PDBbind: -logKd/Ki=5.71, Kd=1.95uM
    208 6ipm:A (1.72) BS01 DCP 2.7.7.7 GO:0003677 ... Q9NP87 31067051 MOAD: Kd=206uM
    PDBbind: -logKd/Ki=3.69, Kd=206uM
    209 6kdk:A (2.56) BS02 DCP 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 32080249
    210 6kdk:C (2.56) BS02 DCP 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 32080249
    211 6nl5:A (2.314) BS01 DCP 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    212 6nl5:B (2.314) BS01 DCP 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    213 6nl5:C (2.314) BS01 DCP 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    214 6nl5:D (2.314) BS01 DCP 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    215 6p1h:A (3.2) BS04 DCP 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P15436 31582849
    216 6p1i:A (2.74) BS03 DCP 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P04585 31301259
    217 6ph6:A (2.6) BS04 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 31801827
    218 6uis:A (2.74834) BS03 DCP 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P04585 31872074
    219 6uit:A (2.80607) BS03 DCP 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P04585 31872074
    220 6v93:A (3.1) BS06 DCP 2.7.7.7 GO:0000166 ... P14284 32807989
    221 6wox:D (3.14) BS04 DCP 2.7.7.6 GO:0000287 ... Q8RQE8 33542236
    222 6x6z:A (1.4) BS05 DCP 2.7.7.- GO:0003684 ... P12689 32999062
    223 6x71:A (1.78) BS06 DCP 2.7.7.- GO:0003684 ... P12689 32999062
    224 6x75:A (1.95) BS06 DCP 2.7.7.- GO:0003684 ... P12689 32999062
    225 6x76:A (2.53) BS06 DCP 2.7.7.- GO:0003684 ... P12689 32999062
    226 6x77:A (1.64) BS06 DCP 2.7.7.- GO:0003684 ... P12689 32999062
    227 7dbn:A (2.67) BS02 DCP 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 34076480
    228 7dbn:C (2.67) BS02 DCP 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 34076480
    229 7fh4:A (1.996) BS02 DCP ? GO:0000166 ... O41078 35764100
    230 7fh4:B (1.996) BS02 DCP ? GO:0000166 ... O41078 35764100
    231 7jk1:A (2.62) BS03 DCP 2.7.7.102
    2.7.7.7    		 GO:0003887 ... Q96LW4 34188055
    232 7jk1:B (2.62) BS02 DCP 2.7.7.102
    2.7.7.7    		 GO:0003887 ... Q96LW4 34188055
    233 7k5t:A (2.3) BS03 DCP 2.7.7.7 GO:0000166 ... E1C9K5 33976175
    234 7kle:A (3.003) BS05 DCP 2.7.7.7 GO:0000287 ... Q97W02 N/A
    235 7klf:A (2.301) BS06 DCP 2.7.7.7 GO:0000287 ... Q97W02 N/A
    236 7lrm:A (3.14) BS02 DCP 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 35218925
    237 7lrm:C (3.14) BS02 DCP 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 35218925
    238 7m4d:A (1.817) BS05 DCP 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 35680862
    239 7m4e:A (1.903) BS07 DCP 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 35680862
    240 7m4h:A (1.923) BS08 DCP 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 35680862
    241 7n2m:A (2.9) BS03 DCP 2.7.7.7 GO:0000166 ... P09884 35467978
    242 7rbg:A (1.9) BS04 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 35238634
    243 7rbh:A (1.75) BS05 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 35238634
    244 7rbi:A (1.93) BS10 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 35238634
    245 7rbj:A (1.91) BS05 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 35238634
    246 7rbk:A (2.2) BS05 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 35238634
    247 7rbk:A (2.2) BS09 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 35238634
    248 7s0t:A (3.05) BS05 DCP 2.7.7.7 GO:0000166 ... P14284 35217661
    249 7sr6:A (2.62) BS04 DCP 2.7.7.49
    3.1.26.4    		 GO:0003676 ... Q9UQG0 35771941
    250 8b6k:A (2.5) BS04 DCP 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 37819038
    251 8b6k:B (2.5) BS05 DCP 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 37819038
    252 8d33:A (2.46) BS04 DCP 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 37202477
    253 8d37:A (2.65) BS04 DCP 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 37202477
    254 8d3r:A (3.04) BS03 DCP 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 37202477
    255 8d42:A (2.91) BS04 DCP 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 37202477
    256 8evf:A (2.87) BS03 DCP 2.7.7.7 GO:0003684 ... Q9Y253 37468099
    257 8ics:A (2.9) BS05 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    258 8ict:A (3.1) BS05 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    259 8iqd:A (2.39) BS03 DCP ? N/A A0A0C5B022 37587714
    260 8iqd:B (2.39) BS03 DCP ? N/A A0A0C5B022 37587714
    261 8iqd:C (2.39) BS03 DCP ? N/A A0A0C5B022 37587714
    262 8iqd:D (2.39) BS03 DCP ? N/A A0A0C5B022 37587714
    263 8j8f:A (2.98) BS03 DCP 2.7.7.7 GO:0000166 ... Q5IXW8 38735603
    264 8qxk:A (2.66) BS04 DCP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    265 8qxk:B (2.66) BS06 DCP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    266 8qxk:C (2.66) BS05 DCP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    267 8qxk:D (2.66) BS08 DCP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    268 8qxl:B (2.82) BS06 DCP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    269 8qxl:D (2.82) BS07 DCP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    270 8qxm:B (2.94) BS04 DCP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    271 8qxm:D (2.94) BS07 DCP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    272 8qxn:B (2.98) BS04 DCP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    273 8qxn:D (2.98) BS07 DCP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    274 8qxo:B (3.43) BS05 DCP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    275 8qxo:D (3.43) BS06 DCP 3.1.5.- GO:0000724 ... Q9Y3Z3 38710701
    276 8tlq:A (3.53) BS04 DCP 2.7.7.7 GO:0000166 ... P14284 38720088
    277 8tlt:A (2.85) BS05 DCP 2.7.7.7 GO:0000166 ... P14284 38720088
    278 8udk:A (3.43) BS03 DCP 2.7.7.7
    3.1.11.-
    4.2.99.-    		 GO:0000262 ... P54098 38787958
    279 8v7a:A (1.95) BS03 DCP 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    280 8vfh:A (2.01) BS06 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    281 8vfi:A (1.77) BS06 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 38634780
    282 9icg:A (3.0) BS04 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    283 9icr:A (3.0) BS05 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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