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BioLiP
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1l6m:A (2.4) BS01 DBH ? GO:0005506 ... P80188 12453412 PDBbind: -logKd/Ki=8.10, Kd=7.9nM
    2 1l6m:A (2.4) BS02 DBH ? GO:0005506 ... P80188 12453412 PDBbind: -logKd/Ki=8.10, Kd=7.9nM
    3 1l6m:B (2.4) BS01 DBH ? GO:0005506 ... P80188 12453412
    4 1l6m:C (2.4) BS01 DBH ? GO:0005506 ... P80188 12453412 MOAD: Kd=7.9nM
    5 1md9:A (2.8) BS02 DBH 6.2.1.71 GO:0005524 ... P40871 12221282
    6 1mdb:A (2.15) BS02 DBH 6.2.1.71 GO:0005524 ... P40871 12221282
    7 3by0:A (2.572) BS02 DBH ? GO:0036094 ... P80188 18680288
    8 3by0:A (2.572) BS03 DBH ? GO:0036094 ... P80188 18680288
    9 3by0:B (2.572) BS01 DBH ? GO:0036094 ... P80188 18680288
    10 3cmp:B (2.8) BS01 DBH ? GO:0036094 ... P80188 N/A
    11 3i0a:B (2.6) BS01 DBH ? GO:0036094 ... P80188 N/A
    12 3sao:B (1.8) BS02 DBH ? GO:0002062 ... P21760 22153502
    13 3t1d:B (2.3) BS02 DBH ? GO:0036094 ... P80188 32647813
    14 3tf6:A (2.35) BS01 DBH ? GO:0005506 ... P80188 N/A PDBbind: -logKd/Ki=6.40, Kd=0.40uM
    15 3tf6:B (2.35) BS01 DBH ? GO:0005506 ... P80188 N/A
    16 3tf6:C (2.35) BS01 DBH ? GO:0005506 ... P80188 N/A
    17 3u0d:A (2.51) BS01 DBH ? GO:0036094 ... P80188 22928018 PDBbind: -logKd/Ki=10.00, Kd=0.101nM
    18 3u0d:A (2.51) BS02 DBH ? GO:0036094 ... P80188 22928018 PDBbind: -logKd/Ki=10.00, Kd=0.101nM
    19 3u0d:A (2.51) BS03 DBH ? GO:0036094 ... P80188 22928018 PDBbind: -logKd/Ki=10.00, Kd=0.101nM
    20 3u0d:B (2.51) BS01 DBH ? GO:0036094 ... P80188 22928018
    21 3u0d:B (2.51) BS02 DBH ? GO:0036094 ... P80188 22928018
    22 3u0d:B (2.51) BS03 DBH ? GO:0036094 ... P80188 22928018
    23 3u0d:C (2.51) BS01 DBH ? GO:0036094 ... P80188 22928018
    24 3u0d:C (2.51) BS02 DBH ? GO:0036094 ... P80188 22928018
    25 3u0d:C (2.51) BS03 DBH ? GO:0036094 ... P80188 22928018
    26 3u0d:D (2.51) BS01 DBH ? GO:0036094 ... P80188 22928018
    27 3u0d:D (2.51) BS02 DBH ? GO:0036094 ... P80188 22928018
    28 3u0d:D (2.51) BS03 DBH ? GO:0036094 ... P80188 22928018
    29 4e5l:A (2.469) BS03 DBH 3.1.-.- GO:0003723 ... Q5EP34 22876176
    30 4e5l:B (2.469) BS03 DBH 3.1.-.- GO:0003723 ... Q5EP34 22876176
    31 4e5l:C (2.469) BS03 DBH 3.1.-.- GO:0003723 ... Q5EP34 22876176
    32 4e5l:D (2.469) BS03 DBH 3.1.-.- GO:0003723 ... Q5EP34 22876176
    33 8u9a:A (1.5) BS01 DBH 1.3.1.28 GO:0000166 ... A0A0H3FXS4 N/A
    34 8u9a:A (1.5) BS02 DBH 1.3.1.28 GO:0000166 ... A0A0H3FXS4 N/A
    35 8u9a:B (1.5) BS01 DBH 1.3.1.28 GO:0000166 ... A0A0H3FXS4 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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