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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1g4a:E (3.0) BS01 DAT ? GO:0000287 ... P0A6H5 11250202
    2 1g4a:F (3.0) BS01 DAT ? GO:0000287 ... P0A6H5 11250202
    3 2pey:A (1.88) BS02 DAT 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O43252 17540769
    4 2pey:B (1.88) BS01 DAT 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O43252 17540769
    5 2pez:A (1.4) BS02 DAT 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O43252 17540769
    6 2pez:B (1.4) BS01 DAT 2.7.1.25
    2.7.7.4    		 GO:0000103 ... O43252 17540769
    7 3iim:A (2.0) BS01 DAT 2.7.4.3 GO:0004017 ... Q9Y3D8 22038794
    8 4erm:A (3.95) BS02 DAT 1.17.4.1 GO:0004748 ... P00452 22727814
    9 4erm:B (3.95) BS02 DAT 1.17.4.1 GO:0004748 ... P00452 22727814
    10 4erm:C (3.95) BS02 DAT 1.17.4.1 GO:0004748 ... P00452 22727814
    11 4erm:D (3.95) BS03 DAT 1.17.4.1 GO:0004748 ... P00452 22727814
    12 4uof:A (2.102) BS01 DAT 2.7.4.6 GO:0004550 ... A5J299 25195883 PDBbind: -logKd/Ki=4.84, Kd=14.6uM
    13 4uof:B (2.102) BS01 DAT 2.7.4.6 GO:0004550 ... A5J299 25195883 PDBbind: -logKd/Ki=4.84, Kd=14.6uM
    14 4uof:C (2.102) BS01 DAT 2.7.4.6 GO:0004550 ... A5J299 25195883
    15 5cns:A (2.975) BS02 DAT 1.17.4.1 GO:0004748 ... P00452 26754917
    16 5cns:B (2.975) BS03 DAT 1.17.4.1 GO:0004748 ... P00452 26754917
    17 5cns:C (2.975) BS02 DAT 1.17.4.1 GO:0004748 ... P00452 26754917
    18 5cns:D (2.975) BS03 DAT 1.17.4.1 GO:0004748 ... P00452 26754917
    19 5cnu:A (3.4) BS03 DAT 1.17.4.1 GO:0004748 ... P00452 26754917
    20 5cnu:B (3.4) BS03 DAT 1.17.4.1 GO:0004748 ... P00452 26754917
    21 5cnu:C (3.4) BS02 DAT 1.17.4.1 GO:0004748 ... P00452 26754917
    22 5cnu:D (3.4) BS03 DAT 1.17.4.1 GO:0004748 ... P00452 26754917
    23 5cnv:A (3.2) BS02 DAT 1.17.4.1 GO:0004748 ... P00452 26754917
    24 5cnv:B (3.2) BS03 DAT 1.17.4.1 GO:0004748 ... P00452 26754917
    25 5cnv:C (3.2) BS02 DAT 1.17.4.1 GO:0004748 ... P00452 26754917
    26 5cnv:D (3.2) BS03 DAT 1.17.4.1 GO:0004748 ... P00452 26754917
    27 5f0x:B (1.6) BS03 DAT 3.6.4.10 GO:0005524 ... P11021 27144892
    28 5ji3:E (3.0) BS01 DAT ? GO:0000287 ... P0A6H5 27667691
    29 5ji3:F (3.0) BS01 DAT ? GO:0000287 ... P0A6H5 27667691
    30 7p4v:A (1.94) BS01 DAT N/A GO:0006808 ... N/A 34445335
    31 8e6s:A (4.6) BS02 DAT N/A N/A O94759 N/A
    32 8e6s:B (4.6) BS02 DAT N/A N/A O94759 N/A
    33 8e6s:C (4.6) BS02 DAT N/A N/A O94759 N/A
    34 8e6s:D (4.6) BS02 DAT N/A N/A O94759 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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