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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1bg9:A (2.8) BS02 DAF 3.2.1.1 GO:0004556 ... P04063 9571044
    2 1g94:A (1.74) BS02 DAF 3.2.1.1 GO:0003824 ... P29957 11914073
    3 1g94:A (1.74) BS04 DAF 3.2.1.1 GO:0003824 ... P29957 11914073
    4 1g9h:A (1.8) BS02 DAF 3.2.1.1 GO:0003824 ... P29957 11914073
    5 1ppi:A (2.2) BS04 DAF 3.2.1.1 GO:0003824 ... P00690 8193143 PDBbind: -logKd/Ki=5.01, Ki=9.7uM
    6 1rp9:A (2.0) BS03 DAF 3.2.1.1 GO:0004556 ... P00693 16030022
    7 1rp9:A (2.0) BS07 DAF 3.2.1.1 GO:0004556 ... P00693 16030022
    8 1rpk:A (2.0) BS02 DAF 3.2.1.1 GO:0004556 ... P00693 16030022
    9 1rpk:A (2.0) BS04 DAF 3.2.1.1 GO:0004556 ... P00693 16030022
    10 1rpk:A (2.0) BS06 DAF 3.2.1.1 GO:0004556 ... P00693 16030022
    11 2gjp:A (1.9) BS03 DAF 3.2.1.98 GO:0004553 ... P19571 16946462
    12 2gjp:A (1.9) BS07 DAF 3.2.1.98 GO:0004553 ... P19571 16946462
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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