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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 864 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1gis:A (1.7) BS01 DA 3.2.2.22 GO:0017148 ... P09989 12874371
    2 1ii7:A (2.2) BS03 DA 3.1.-.- GO:0000729 ... Q8U1N9 11371344
    3 1lgn:A (2.8) BS03 DA ? GO:0001849 ... P02743 9217261
    4 1lgn:B (2.8) BS03 DA ? GO:0001849 ... P02743 9217261
    5 1lgn:C (2.8) BS03 DA ? GO:0001849 ... P02743 9217261
    6 1lgn:D (2.8) BS03 DA ? GO:0001849 ... P02743 9217261
    7 1lgn:E (2.8) BS03 DA ? GO:0001849 ... P02743 9217261
    8 3bbb:C (1.3) BS01 DA 2.7.13.3
    2.7.4.6    		 GO:0001726 ... P22392 19435876 PDBbind: -logKd/Ki=7.00, Kd=100nM
    9 3bbb:E (1.3) BS01 DA 2.7.13.3
    2.7.4.6    		 GO:0001726 ... P22392 19435876
    10 3taz:B (3.2) BS02 DA 3.1.-.- GO:0004519 ... Q8U1N8 22064858
    11 4ek2:A (2.0) BS01 DA 2.7.4.6 GO:0004550 ... Q2SWE7 23382856
    12 4ns1:A (1.64) BS01 DA 2.4.2.1 GO:0003824 ... B2RKN6 N/A
    13 4ns1:B (1.64) BS01 DA 2.4.2.1 GO:0003824 ... B2RKN6 N/A
    14 4ns1:C (1.64) BS01 DA 2.4.2.1 GO:0003824 ... B2RKN6 N/A
    15 4ns1:D (1.64) BS01 DA 2.4.2.1 GO:0003824 ... B2RKN6 N/A
    16 4rso:A (3.5) BS01 DA ? GO:0005198 ... Q808Y3 26334681
    17 5v0a:Z (2.38) BS06 DA 3.1.-.- GO:0003677 ... Q9UQ84 28533382
    18 6cgl:A (3.2) BS01 DA 1.17.4.1 GO:0004748 ... P50620 29712847
    19 6cgl:B (3.2) BS01 DA 1.17.4.1 GO:0004748 ... P50620 29712847
    20 6cgn:A (2.26) BS01 DA 1.17.4.1 GO:0004748 ... P50620 29712847
    21 6txr:B (2.5) BS02 DA 1.1.1.27 GO:0000166 ... Q4PRK9 32631977
    22 6txr:D (2.5) BS02 DA 1.1.1.27 GO:0000166 ... Q4PRK9 32631977
    23 6u0r:1 (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    24 6u0r:2 (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    25 6u0r:3 (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    26 6u0r:4 (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    27 6u0r:5 (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    28 6u0r:6 (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    29 6u0r:7 (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    30 6u0r:8 (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    31 6u0r:A (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    32 6u0r:B (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    33 6u0r:C (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    34 6u0r:D (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    35 6u0r:E (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    36 6u0r:F (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    37 6u0r:G (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    38 6u0r:H (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    39 6u0r:I (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    40 6u0r:J (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    41 6u0r:K (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    42 6u0r:L (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    43 6u0r:M (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    44 6u0r:N (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    45 6u0r:O (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    46 6u0r:P (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    47 6u0r:Q (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    48 6u0r:R (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    49 6u0r:S (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    50 6u0r:T (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    51 6u0r:U (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    52 6u0r:V (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    53 6u0r:W (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    54 6u0r:X (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    55 6u0r:Y (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    56 6u0r:Z (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    57 6u0r:a (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    58 6u0r:b (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    59 6u0r:c (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    60 6u0r:d (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    61 6u0r:e (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    62 6u0r:f (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    63 6u0r:g (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    64 6u0r:h (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    65 6u0r:i (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    66 6u0r:j (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    67 6u0r:k (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    68 6u0r:l (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    69 6u0r:m (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    70 6u0r:n (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    71 6u0r:o (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    72 6u0r:p (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    73 6u0r:q (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    74 6u0r:r (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    75 6u0r:s (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    76 6u0r:t (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    77 6u0r:u (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    78 6u0r:v (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    79 6u0r:w (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    80 6u0r:x (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    81 6u0r:y (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    82 6u0r:z (2.91) BS01 DA ? GO:0005198 ... P03135 N/A
    83 6v10:1 (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    84 6v10:2 (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    85 6v10:3 (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    86 6v10:4 (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    87 6v10:5 (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    88 6v10:6 (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    89 6v10:7 (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    90 6v10:8 (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    91 6v10:A (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    92 6v10:B (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    93 6v10:C (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    94 6v10:D (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    95 6v10:E (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    96 6v10:F (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    97 6v10:G (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    98 6v10:H (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    99 6v10:I (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    100 6v10:J (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    101 6v10:K (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    102 6v10:L (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    103 6v10:M (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    104 6v10:N (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    105 6v10:O (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    106 6v10:P (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    107 6v10:Q (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    108 6v10:R (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    109 6v10:S (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    110 6v10:T (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    111 6v10:U (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    112 6v10:V (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    113 6v10:W (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    114 6v10:X (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    115 6v10:Y (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    116 6v10:Z (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    117 6v10:a (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    118 6v10:b (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    119 6v10:c (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    120 6v10:d (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    121 6v10:e (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    122 6v10:f (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    123 6v10:g (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    124 6v10:h (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    125 6v10:i (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    126 6v10:j (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    127 6v10:k (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    128 6v10:l (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    129 6v10:m (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    130 6v10:n (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    131 6v10:o (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    132 6v10:p (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    133 6v10:q (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    134 6v10:r (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    135 6v10:s (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    136 6v10:t (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    137 6v10:u (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    138 6v10:v (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    139 6v10:w (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    140 6v10:x (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    141 6v10:y (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    142 6v10:z (3.77) BS01 DA ? GO:0005198 ... Q8JQF8 31826994
    143 6v1g:1 (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    144 6v1g:2 (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    145 6v1g:3 (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    146 6v1g:4 (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    147 6v1g:5 (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    148 6v1g:6 (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    149 6v1g:7 (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    150 6v1g:8 (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    151 6v1g:A (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    152 6v1g:B (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    153 6v1g:C (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    154 6v1g:D (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    155 6v1g:E (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    156 6v1g:F (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    157 6v1g:G (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    158 6v1g:H (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    159 6v1g:I (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    160 6v1g:J (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    161 6v1g:K (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    162 6v1g:L (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    163 6v1g:M (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    164 6v1g:N (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    165 6v1g:O (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    166 6v1g:P (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    167 6v1g:Q (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    168 6v1g:R (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    169 6v1g:S (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    170 6v1g:T (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    171 6v1g:U (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    172 6v1g:V (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    173 6v1g:W (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    174 6v1g:X (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    175 6v1g:Y (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    176 6v1g:Z (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    177 6v1g:a (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    178 6v1g:b (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    179 6v1g:c (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    180 6v1g:d (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    181 6v1g:e (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    182 6v1g:f (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    183 6v1g:g (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    184 6v1g:h (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    185 6v1g:i (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    186 6v1g:j (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    187 6v1g:k (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    188 6v1g:l (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    189 6v1g:m (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    190 6v1g:n (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    191 6v1g:o (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    192 6v1g:p (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    193 6v1g:q (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    194 6v1g:r (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    195 6v1g:s (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    196 6v1g:t (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    197 6v1g:u (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    198 6v1g:v (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    199 6v1g:w (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    200 6v1g:x (2.98) BS01 DA ? GO:0005198 ... Q6JC62 31826994
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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