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BioLiP
Download all results in tab-seperated text for 71 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2g8g:A (3.2) BS01 D5M ? GO:0005198 ... O41855 16971437
    2 2ioc:A (2.1) BS02 D5M 3.1.11.2 GO:0003676 ... Q91XB0 17293595
    3 2ioc:B (2.1) BS02 D5M 3.1.11.2 GO:0003676 ... Q91XB0 17293595
    4 2pau:A (2.1) BS02 D5M 3.1.3.89 GO:0000166 ... P76491 18353368
    5 2pau:B (2.1) BS02 D5M 3.1.3.89 GO:0000166 ... P76491 18353368
    6 2qro:A (3.45) BS03 D5M 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 18084067
    7 2qro:B (3.45) BS03 D5M 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 18084067
    8 2qro:C (3.45) BS03 D5M 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 18084067
    9 2qro:D (3.45) BS03 D5M 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 18084067
    10 3kic:A (2.603) BS01 D5M ? GO:0005198 ... O56139 20444480
    11 3kic:B (2.603) BS01 D5M ? GO:0005198 ... O56139 20444480
    12 3kic:C (2.603) BS01 D5M ? GO:0005198 ... O56139 20444480
    13 3kic:D (2.603) BS01 D5M ? GO:0005198 ... O56139 20444480
    14 3kic:E (2.603) BS01 D5M ? GO:0005198 ... O56139 20444480
    15 3kic:F (2.603) BS01 D5M ? GO:0005198 ... O56139 20444480
    16 3kic:G (2.603) BS01 D5M ? GO:0005198 ... O56139 20444480
    17 3kic:H (2.603) BS01 D5M ? GO:0005198 ... O56139 20444480
    18 3kic:I (2.603) BS01 D5M ? GO:0005198 ... O56139 20444480
    19 3kic:J (2.603) BS01 D5M ? GO:0005198 ... O56139 20444480
    20 3kic:K (2.603) BS01 D5M ? GO:0005198 ... O56139 20444480
    21 3kic:L (2.603) BS01 D5M ? GO:0005198 ... O56139 20444480
    22 3kic:M (2.603) BS01 D5M ? GO:0005198 ... O56139 20444480
    23 3kic:N (2.603) BS01 D5M ? GO:0005198 ... O56139 20444480
    24 3kic:O (2.603) BS01 D5M ? GO:0005198 ... O56139 20444480
    25 3kic:P (2.603) BS01 D5M ? GO:0005198 ... O56139 20444480
    26 3kic:Q (2.603) BS01 D5M ? GO:0005198 ... O56139 20444480
    27 3kic:R (2.603) BS01 D5M ? GO:0005198 ... O56139 20444480
    28 3kic:S (2.603) BS01 D5M ? GO:0005198 ... O56139 20444480
    29 3kic:T (2.603) BS01 D5M ? GO:0005198 ... O56139 20444480
    30 3kie:A (3.0) BS01 D5M ? GO:0005198 ... O56139 20444480
    31 3kie:B (3.0) BS01 D5M ? GO:0005198 ... O56139 20444480
    32 3kie:C (3.0) BS01 D5M ? GO:0005198 ... O56139 20444480
    33 3kie:D (3.0) BS01 D5M ? GO:0005198 ... O56139 20444480
    34 3kie:E (3.0) BS01 D5M ? GO:0005198 ... O56139 20444480
    35 3kie:F (3.0) BS01 D5M ? GO:0005198 ... O56139 20444480
    36 3kie:G (3.0) BS01 D5M ? GO:0005198 ... O56139 20444480
    37 3kie:H (3.0) BS01 D5M ? GO:0005198 ... O56139 20444480
    38 3kie:I (3.0) BS01 D5M ? GO:0005198 ... O56139 20444480
    39 3kie:J (3.0) BS01 D5M ? GO:0005198 ... O56139 20444480
    40 3kie:K (3.0) BS01 D5M ? GO:0005198 ... O56139 20444480
    41 3kie:L (3.0) BS01 D5M ? GO:0005198 ... O56139 20444480
    42 3kie:M (3.0) BS01 D5M ? GO:0005198 ... O56139 20444480
    43 3kie:N (3.0) BS01 D5M ? GO:0005198 ... O56139 20444480
    44 3kie:O (3.0) BS01 D5M ? GO:0005198 ... O56139 20444480
    45 3kie:P (3.0) BS01 D5M ? GO:0005198 ... O56139 20444480
    46 3kie:Q (3.0) BS01 D5M ? GO:0005198 ... O56139 20444480
    47 3kie:R (3.0) BS01 D5M ? GO:0005198 ... O56139 20444480
    48 3kie:S (3.0) BS01 D5M ? GO:0005198 ... O56139 20444480
    49 3kie:T (3.0) BS01 D5M ? GO:0005198 ... O56139 20444480
    50 3qtb:A (2.1) BS01 D5M ? N/A O29432 23745136
    51 3sz4:A (2.59) BS02 D5M ? GO:0004527 ... C1D7P6 21893587
    52 4cxo:A (1.67) BS02 D5M 3.1.30.1 GO:0000014 ... Q9C9G4 25157844
    53 4gyz:A (2.556) BS01 D5M 3.1.4.- GO:0003824 ... Q9JJX7 23104055
    54 4gyz:B (2.556) BS01 D5M 3.1.4.- GO:0003824 ... Q9JJX7 23104055
    55 4gyz:B (2.556) BS02 D5M 3.1.4.- GO:0003824 ... Q9JJX7 23104055
    56 4gyz:C (2.556) BS01 D5M 3.1.4.- GO:0003824 ... Q9JJX7 23104055
    57 4gyz:D (2.556) BS01 D5M 3.1.4.- GO:0003824 ... Q9JJX7 23104055
    58 4gyz:E (2.556) BS01 D5M 3.1.4.- GO:0003824 ... Q9JJX7 23104055
    59 4gyz:H (2.556) BS01 D5M 3.1.4.- GO:0003824 ... Q9JJX7 23104055
    60 4gyz:I (2.556) BS01 D5M 3.1.4.- GO:0003824 ... Q9JJX7 23104055
    61 4iov:A (3.5) BS01 D5M ? GO:0005198 ... B4Y891 24704217
    62 5ihe:A (2.5) BS01 D5M 2.7.7.7
    3.1.11.1    		 GO:0003676 ... Q9V2F3 27548043
    63 5ihe:B (2.5) BS01 D5M 2.7.7.7
    3.1.11.1    		 GO:0003676 ... Q9V2F3 27548043
    64 6b42:A (1.13) BS01 D5M 3.4.22.-
    3.9.1.-    		 GO:0000118 ... P49773 28968488
    65 6loy:A (1.35) BS01 D5M 3.2.2.22 GO:0017148 ... P16094 32653369
    66 7a1f:A (1.8) BS02 D5M 3.1.-.-
    3.5.2.6    		 N/A Q9H816 34387694
    67 7a1f:A (1.8) BS03 D5M 3.1.-.-
    3.5.2.6    		 N/A Q9H816 34387694
    68 7a1f:L (1.8) BS02 D5M 3.1.-.-
    3.5.2.6    		 N/A Q9H816 34387694
    69 7a1f:L (1.8) BS03 D5M 3.1.-.-
    3.5.2.6    		 N/A Q9H816 34387694
    70 7v7x:A (2.7) BS01 D5M ? GO:0046872 ... A0A1U8X168 N/A
    71 8hcg:A (1.799) BS01 D5M 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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