Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 251 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 2 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 8fq8:B (3.11) BS02 CYZ ? GO:0005216 ... P19491 38409505
    202 8fq8:B (3.11) BS03 CYZ ? GO:0005216 ... P19491 38409505
    203 8fq8:C (3.11) BS01 CYZ ? GO:0005216 ... P19491 38409505
    204 8fq8:C (3.11) BS03 CYZ ? GO:0005216 ... P19491 38409505
    205 8fq8:D (3.11) BS01 CYZ ? GO:0005216 ... P19491 38409505
    206 8fq8:D (3.11) BS03 CYZ ? GO:0005216 ... P19491 38409505
    207 8fqa:A (3.35) BS02 CYZ ? GO:0005216 ... P19491 38409505
    208 8fqa:A (3.35) BS03 CYZ ? GO:0005216 ... P19491 38409505
    209 8fqa:B (3.35) BS02 CYZ ? GO:0005216 ... P19491 38409505
    210 8fqa:B (3.35) BS03 CYZ ? GO:0005216 ... P19491 38409505
    211 8fqa:C (3.35) BS01 CYZ ? GO:0005216 ... P19491 38409505
    212 8fqa:C (3.35) BS03 CYZ ? GO:0005216 ... P19491 38409505
    213 8fqa:D (3.35) BS02 CYZ ? GO:0005216 ... P19491 38409505
    214 8fqd:A (3.01) BS02 CYZ ? GO:0005216 ... P19491 38409505
    215 8fqd:A (3.01) BS03 CYZ ? GO:0005216 ... P19491 38409505
    216 8fqd:B (3.01) BS02 CYZ ? GO:0005216 ... P19491 38409505
    217 8fqd:B (3.01) BS03 CYZ ? GO:0005216 ... P19491 38409505
    218 8fqd:C (3.01) BS01 CYZ ? GO:0005216 ... P19491 38409505
    219 8fqd:C (3.01) BS03 CYZ ? GO:0005216 ... P19491 38409505
    220 8fqd:D (3.01) BS01 CYZ ? GO:0005216 ... P19491 38409505
    221 8fqd:D (3.01) BS03 CYZ ? GO:0005216 ... P19491 38409505
    222 8fqe:A (3.14) BS02 CYZ ? GO:0005216 ... P19491 38409505
    223 8fqe:A (3.14) BS03 CYZ ? GO:0005216 ... P19491 38409505
    224 8fqe:B (3.14) BS02 CYZ ? GO:0005216 ... P19491 38409505
    225 8fqe:C (3.14) BS01 CYZ ? GO:0005216 ... P19491 38409505
    226 8fqe:C (3.14) BS03 CYZ ? GO:0005216 ... P19491 38409505
    227 8fqe:D (3.14) BS02 CYZ ? GO:0005216 ... P19491 38409505
    228 8fqg:A (3.01) BS02 CYZ ? GO:0005216 ... P19491 38409505
    229 8fqg:A (3.01) BS03 CYZ ? GO:0005216 ... P19491 38409505
    230 8fqg:B (3.01) BS02 CYZ ? GO:0005216 ... P19491 38409505
    231 8fqg:B (3.01) BS03 CYZ ? GO:0005216 ... P19491 38409505
    232 8fqg:C (3.01) BS01 CYZ ? GO:0005216 ... P19491 38409505
    233 8fqg:C (3.01) BS03 CYZ ? GO:0005216 ... P19491 38409505
    234 8fqg:D (3.01) BS01 CYZ ? GO:0005216 ... P19491 38409505
    235 8fqg:D (3.01) BS03 CYZ ? GO:0005216 ... P19491 38409505
    236 8fqh:A (3.43) BS02 CYZ ? GO:0005216 ... P19491 38409505
    237 8fqh:A (3.43) BS03 CYZ ? GO:0005216 ... P19491 38409505
    238 8fqh:B (3.43) BS02 CYZ ? GO:0005216 ... P19491 38409505
    239 8fqh:B (3.43) BS03 CYZ ? GO:0005216 ... P19491 38409505
    240 8fqh:C (3.43) BS01 CYZ ? GO:0005216 ... P19491 38409505
    241 8fqh:C (3.43) BS03 CYZ ? GO:0005216 ... P19491 38409505
    242 8fqh:D (3.43) BS01 CYZ ? GO:0005216 ... P19491 38409505
    243 8fqh:D (3.43) BS02 CYZ ? GO:0005216 ... P19491 38409505
    244 8fr0:A (3.04) BS02 CYZ ? GO:0005216 ... P19491 38409505
    245 8fr0:A (3.04) BS03 CYZ ? GO:0005216 ... P19491 38409505
    246 8fr0:B (3.04) BS02 CYZ ? GO:0005216 ... P19491 38409505
    247 8fr0:B (3.04) BS03 CYZ ? GO:0005216 ... P19491 38409505
    248 8fr0:C (3.04) BS01 CYZ ? GO:0005216 ... P19491 38409505
    249 8fr0:C (3.04) BS03 CYZ ? GO:0005216 ... P19491 38409505
    250 8fr0:D (3.04) BS01 CYZ ? GO:0005216 ... P19491 38409505
    251 8fr0:D (3.04) BS03 CYZ ? GO:0005216 ... P19491 38409505
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218