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BioLiP
Download all results in tab-seperated text for 292 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 6jvu:E (2.8) BS02 CYS 2.3.1.30 GO:0005737 ... A6TFK2 31751684
    202 6jvu:F (2.8) BS01 CYS 2.3.1.30 GO:0005737 ... A6TFK2 31751684
    203 6jvu:F (2.8) BS02 CYS 2.3.1.30 GO:0005737 ... A6TFK2 31751684
    204 6ld8:A (2.31) BS02 CYS ? GO:0003962 ... Q5H1U9 N/A
    205 6ld8:A (2.31) BS04 CYS ? GO:0003962 ... Q5H1U9 N/A
    206 6ld8:B (2.31) BS02 CYS ? GO:0003962 ... Q5H1U9 N/A
    207 6ld8:B (2.31) BS04 CYS ? GO:0003962 ... Q5H1U9 N/A
    208 6ld8:C (2.31) BS02 CYS ? GO:0003962 ... Q5H1U9 N/A
    209 6ld8:C (2.31) BS04 CYS ? GO:0003962 ... Q5H1U9 N/A
    210 6ld8:D (2.31) BS02 CYS ? GO:0003962 ... Q5H1U9 N/A
    211 6ld8:D (2.31) BS04 CYS ? GO:0003962 ... Q5H1U9 N/A
    212 6m1t:A (1.9) BS02 CYS ? GO:0016740 ... O30347 N/A
    213 6m1t:B (1.9) BS02 CYS ? GO:0016740 ... O30347 N/A
    214 6m4j:A (1.8) BS02 CYS N/A N/A N/A 32345643
    215 6m4j:B (1.8) BS02 CYS N/A N/A N/A 32345643
    216 6n42:A (2.199) BS02 CYS 1.13.11.20 GO:0000097 ... Q16878 30946568
    217 6n43:A (2.289) BS01 CYS 1.13.11.20 GO:0000097 ... Q16878 30946568
    218 6nu1:A (2.25) BS01 CYS 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 31386812
    219 6nu1:B (2.25) BS01 CYS 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 31386812
    220 6nu1:C (2.25) BS01 CYS 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 31386812
    221 6nu1:D (2.25) BS01 CYS 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 31386812 PDBbind: -logKd/Ki=4.51, Kd=31.2uM
    222 6nu5:A (1.6) BS01 CYS 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 31386812 PDBbind: -logKd/Ki=5.15, Kd=7.04uM
    223 6nu5:B (1.6) BS01 CYS 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 31386812
    224 6p6d:B (2.31) BS02 CYS ? N/A P0DOX5 31640157
    225 6qio:B (1.95) BS01 CYS ? N/A P55899 32208682
    226 6r89:A (2.5) BS01 CYS ? GO:0015276 ... Q9C8E7 31871183
    227 6r89:B (2.5) BS01 CYS ? GO:0015276 ... Q9C8E7 31871183
    228 6r89:C (2.5) BS01 CYS ? GO:0015276 ... Q9C8E7 31871183
    229 6r89:D (2.5) BS01 CYS ? GO:0015276 ... Q9C8E7 31871183
    230 6t48:A (2.17) BS01 CYS 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 N/A Q2LKZ0 31909201
    231 7ad6:A (2.75) BS01 CYS ? GO:0004866 ... P01031 33570492
    232 7api:A (3.0) BS01 CYS ? GO:0004867 ... P01009 2785270
    233 7bw9:A (2.131) BS01 CYS 2.3.1.30 GO:0005829 ... Q401L4 N/A
    234 7bw9:A (2.131) BS02 CYS 2.3.1.30 GO:0005829 ... Q401L4 N/A
    235 7bw9:B (2.131) BS01 CYS 2.3.1.30 GO:0005829 ... Q401L4 N/A
    236 7bw9:B (2.131) BS02 CYS 2.3.1.30 GO:0005829 ... Q401L4 N/A
    237 7bw9:C (2.131) BS01 CYS 2.3.1.30 GO:0005829 ... Q401L4 N/A
    238 7bw9:C (2.131) BS02 CYS 2.3.1.30 GO:0005829 ... Q401L4 N/A
    239 7e3y:A (1.9) BS01 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 N/A
    240 7e3y:A (1.9) BS02 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 N/A
    241 7e3y:B (1.9) BS01 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 N/A
    242 7e3y:B (1.9) BS02 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 N/A
    243 7e3y:C (1.9) BS01 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 N/A
    244 7e3y:C (1.9) BS02 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 N/A
    245 7emy:A (2.97) BS04 CYS 6.2.1.69 GO:0003824 ... G3XCV2 35105906
    246 7emy:B (2.97) BS04 CYS 6.2.1.69 GO:0003824 ... G3XCV2 35105906
    247 7en1:A (3.47) BS04 CYS 6.2.1.69 GO:0003824 ... G3XCV2 35105906
    248 7en1:B (3.47) BS04 CYS 6.2.1.69 GO:0003824 ... G3XCV2 35105906
    249 7jwn:A (2.6) BS01 CYS ? GO:0003677 ... P02768 36071810
    250 7o1o:A (1.25) BS01 CYS 1.8.-.- GO:0003824 ... Q9X0Z6 34048236
    251 7o1s:A (1.39) BS01 CYS 1.8.-.- GO:0003824 ... Q9X0Z6 34048236
    252 7o1t:A (1.5) BS01 CYS 1.8.-.- GO:0003824 ... Q9X0Z6 34048236
    253 7o25:A (1.34) BS01 CYS 1.8.-.- GO:0003824 ... Q9X0Z6 34048236
    254 7o26:A (1.5) BS01 CYS 1.8.-.- GO:0003824 ... Q9X0Z6 34048236
    255 7p3l:A (1.32) BS03 CYS 1.21.3.1 GO:0005506 ... P05326 N/A
    256 7q5d:A (1.8) BS01 CYS ? GO:0038023 ... Q9UNN8 N/A
    257 7rdk:B (2.46) BS01 CYS N/A N/A N/A 34666044
    258 7rdm:B (2.08) BS01 CYS N/A N/A N/A 34666044
    259 7rs3:B (1.84) BS03 CYS ? N/A P03372 34452998
    260 8api:A (3.1) BS01 CYS ? GO:0004867 ... P01009 2785270
    261 8biz:A (1.891) BS03 CYS 4.4.1.1 GO:0004123 ... B6K8Y1 36883335
    262 8biz:E (1.891) BS02 CYS 4.4.1.1 GO:0004123 ... B6K8Y1 36883335
    263 8i06:A (2.5) BS01 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    264 8i09:A (1.8) BS01 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    265 8i09:A (1.8) BS02 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    266 8i09:B (1.8) BS01 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    267 8i09:B (1.8) BS03 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    268 8i09:C (1.8) BS01 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    269 8i09:D (1.8) BS01 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    270 8i09:D (1.8) BS04 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    271 8i09:E (1.8) BS01 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    272 8i09:E (1.8) BS03 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    273 8i09:F (1.8) BS02 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    274 8i09:F (1.8) BS04 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    275 8i09:G (1.8) BS01 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    276 8i09:G (1.8) BS04 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    277 8i09:H (1.8) BS03 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    278 8i09:I (1.8) BS02 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    279 8i09:I (1.8) BS04 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    280 8i09:J (1.8) BS01 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    281 8i09:K (1.8) BS02 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    282 8i09:L (1.8) BS01 CYS 2.3.1.30 GO:0005737 ... A0A0D6I3Y9 37965540
    283 8khq:A (2.69) BS03 CYS ? N/A A0A1I5R890 38058600
    284 8khq:B (2.69) BS03 CYS ? N/A A0A1I5R890 38058600
    285 8khq:C (2.69) BS03 CYS ? N/A A0A1I5R890 38058600
    286 8khq:D (2.69) BS03 CYS ? N/A A0A1I5R890 38058600
    287 8qmk:A (1.3) BS05 CYS 1.8.-.- GO:0003824 ... Q9X0Z6 37962296
    288 8slv:A (2.32) BS01 CYS 3.2.1.20 GO:0005975 ... P13080 38428508
    289 8v05:A (2.08) BS02 CYS 3.1.16.1 GO:0003824 ... O35405 38537643
    290 8vii:A (1.621) BS03 CYS N/A N/A B1WTS6 39216472
    291 8vii:B (1.621) BS03 CYS N/A N/A B1WTS6 39216472
    292 9api:A (3.0) BS01 CYS ? GO:0004867 ... P01009 2785270
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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