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BioLiP
Download all results in tab-seperated text for 107 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1b0b:A (1.43) BS01 CYN ? GO:0005576 ... P41260 10423453
    2 1d5l:A (1.9) BS01 CYN 1.11.2.2 GO:0004601 ... P05164 11705390
    3 1d5l:B (1.9) BS01 CYN 1.11.2.2 GO:0004601 ... P05164 11705390
    4 1d7w:A (1.9) BS01 CYN 1.11.2.2 GO:0004601 ... P05164 11705390
    5 1dgg:A (1.8) BS01 CYN 1.11.1.6 GO:0000302 ... P04040 10656833
    6 1dgg:B (1.8) BS01 CYN 1.11.1.6 GO:0000302 ... P04040 10656833
    7 1dgg:C (1.8) BS01 CYN 1.11.1.6 GO:0000302 ... P04040 10656833
    8 1dgg:D (1.8) BS01 CYN 1.11.1.6 GO:0000302 ... P04040 10656833
    9 1dnw:A (1.9) BS01 CYN 1.11.2.2 GO:0004601 ... P05164 11705390
    10 1dw1:A (1.9) BS01 CYN ? GO:0009055 ... P81238 10821858
    11 1dw1:B (1.9) BS01 CYN ? GO:0009055 ... P81238 10821858
    12 1dw1:C (1.9) BS01 CYN ? GO:0009055 ... P81238 10821858
    13 1e2r:A (1.59) BS03 CYN 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 10827177
    14 1e2r:B (1.59) BS03 CYN 1.7.2.1
    1.7.99.1    		 GO:0009055 ... P72181 10827177
    15 1ebc:A (1.8) BS01 CYN 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 10423453
    16 1ebt:A (1.9) BS01 CYN ? GO:0005576 ... P41260 10423453
    17 1eoa:B (2.15) BS02 CYN 1.13.11.3 GO:0003824 ... P20372 10891075
    18 1eoa:B (2.15) BS03 CYN 1.13.11.3 GO:0003824 ... P20372 10891075
    19 1eoa:B (2.15) BS04 CYN 1.13.11.3 GO:0003824 ... P20372 10891075
    20 1fhb:A (-1.00) BS01 CYN ? GO:0005515 ... P00044 7547866
    21 1h1x:A (1.4) BS02 CYN 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 14563209
    22 1jl6:A (1.4) BS01 CYN ? GO:0001666 ... P15447 12211015
    23 1jl7:A (1.4) BS01 CYN ? GO:0001666 ... P02216 12211015
    24 1lht:A (2.0) BS01 CYN 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P56208 7714901
    25 1lt0:A (2.4) BS01 CYN 2.7.13.3 GO:0006355 ... P23222 12390021
    26 1ngk:A (2.11) BS01 CYN ? GO:0005344 ... P9WN23 12719529
    27 1ngk:B (2.11) BS01 CYN ? GO:0005344 ... P9WN23 12719529
    28 1ngk:C (2.11) BS01 CYN ? GO:0005344 ... P9WN23 12719529
    29 1ngk:D (2.11) BS01 CYN ? GO:0005344 ... P9WN23 12719529
    30 1ngk:E (2.11) BS01 CYN ? GO:0005344 ... P9WN23 12719529
    31 1ngk:F (2.11) BS01 CYN ? GO:0005344 ... P9WN23 12719529
    32 1ngk:G (2.11) BS01 CYN ? GO:0005344 ... P9WN23 12719529
    33 1ngk:H (2.11) BS01 CYN ? GO:0005344 ... P9WN23 12719529
    34 1ngk:I (2.11) BS01 CYN ? GO:0005344 ... P9WN23 12719529
    35 1ngk:J (2.11) BS01 CYN ? GO:0005344 ... P9WN23 12719529
    36 1ngk:K (2.11) BS01 CYN ? GO:0005344 ... P9WN23 12719529
    37 1ngk:L (2.11) BS01 CYN ? GO:0005344 ... P9WN23 12719529
    38 1o76:B (1.8) BS02 CYN 1.14.15.1 GO:0004497 ... P00183 12464241
    39 1s69:A (1.68) BS01 CYN ? GO:0005344 ... P73925 15289104
    40 1shr:A (1.88) BS01 CYN ? GO:0004601 ... P69905 15449937
    41 1shr:B (1.88) BS01 CYN ? GO:0004601 ... P02042 15449937
    42 1shr:B (1.88) BS03 CYN ? GO:0004601 ... P02042 15449937
    43 1shr:B (1.88) BS04 CYN ? GO:0004601 ... P02042 15449937
    44 1shr:C (1.88) BS01 CYN ? GO:0004601 ... P69905 15449937
    45 1shr:D (1.88) BS01 CYN ? GO:0004601 ... P02042 15449937
    46 1shr:D (1.88) BS02 CYN ? GO:0004601 ... P02042 15449937
    47 1shr:D (1.88) BS03 CYN ? GO:0004601 ... P02042 15449937
    48 1si4:A (2.2) BS01 CYN ? GO:0004601 ... P69905 15449937
    49 1si4:B (2.2) BS01 CYN ? GO:0004601 ... P02042 15449937
    50 1si4:C (2.2) BS01 CYN ? GO:0004601 ... P69905 15449937
    51 1uvx:A (2.45) BS02 CYN ? GO:0015671 ... Q08753 15016811
    52 1ux8:A (2.15) BS02 CYN ? GO:0005344 ... O31607 15590662
    53 2ciy:A (1.7) BS12 CYN 1.11.1.10 GO:0004601 ... P04963 16790441
    54 2e7e:A (1.85) BS01 CYN 1.14.14.18 GO:0001525 ... P06762 17554165
    55 2fal:A (1.8) BS01 CYN ? GO:0005344 ... P02210 8411158
    56 2lhb:A (2.0) BS01 CYN ? GO:0005344 ... P02208 4032476
    57 2oif:A (1.8) BS01 CYN 1.7.2.- GO:0005634 ... Q42831 17560601
    58 2oif:B (1.8) BS01 CYN 1.7.2.- GO:0005634 ... Q42831 17560601
    59 2oif:C (1.8) BS01 CYN 1.7.2.- GO:0005634 ... Q42831 17560601
    60 2oif:D (1.8) BS01 CYN 1.7.2.- GO:0005634 ... Q42831 17560601
    61 2oif:E (1.8) BS01 CYN 1.7.2.- GO:0005634 ... Q42831 17560601
    62 2oif:F (1.8) BS01 CYN 1.7.2.- GO:0005634 ... Q42831 17560601
    63 2oif:G (1.8) BS01 CYN 1.7.2.- GO:0005634 ... Q42831 17560601
    64 2oif:H (1.8) BS01 CYN 1.7.2.- GO:0005634 ... Q42831 17560601
    65 3fyi:A (2.2) BS06 CYN 7.1.1.9 GO:0004129 ... P33517 19397279
    66 3fyi:C (2.2) BS06 CYN 7.1.1.9 GO:0004129 ... P33517 19397279
    67 3i04:A (2.15) BS04 CYN 1.2.7.4 GO:0003824 ... P27989 19583207
    68 3i04:B (2.15) BS04 CYN 1.2.7.4 GO:0003824 ... P27989 19583207
    69 3i04:C (2.15) BS04 CYN 1.2.7.4 GO:0003824 ... P27989 19583207
    70 3i04:D (2.15) BS04 CYN 1.2.7.4 GO:0003824 ... P27989 19583207
    71 3i39:X (1.36) BS06 CYN 1.2.7.4 GO:0003824 ... Q9F8A8 19583208
    72 3kun:A (1.26) BS02 CYN ? GO:0004601 ... Q9NAV8 20606257
    73 3kun:B (1.26) BS02 CYN ? GO:0004601 ... Q9NAV8 20606257
    74 3kuo:A (1.26) BS02 CYN ? GO:0004601 ... Q9NAV8 20606257
    75 3kuo:B (1.26) BS02 CYN ? GO:0004601 ... Q9NAV8 20606257
    76 3mm2:A (1.45) BS02 CYN 1.11.1.19 GO:0004601 ... Q8WZK8 21569205
    77 3mm3:A (1.4) BS02 CYN 1.11.1.19 GO:0004601 ... Q8WZK8 21569205
    78 3mm6:A (1.9) BS04 CYN 1.8.1.22 GO:0000103 ... Q59109 20822098
    79 3mm6:D (1.9) BS04 CYN 1.8.1.22 GO:0000103 ... Q59109 20822098
    80 3mmo:A (1.55) BS09 CYN 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    81 3mmo:B (1.55) BS09 CYN 1.7.2.2 GO:0005509 ... L0DSL2 20944237
    82 3mym:A (1.72) BS02 CYN ? GO:0004601 ... Q9NAV8 21950839
    83 3mym:B (1.72) BS02 CYN ? GO:0004601 ... Q9NAV8 21950839
    84 3myn:A (2.194) BS02 CYN ? GO:0004601 ... Q9NAV8 21950839
    85 3myn:B (2.194) BS02 CYN ? GO:0004601 ... Q9NAV8 21950839
    86 3x2q:A (2.0) BS01 CYN 7.1.1.9 GO:0004129 ... P00396 26057802
    87 3x2q:N (2.0) BS01 CYN 7.1.1.9 GO:0004129 ... P00396 26057802
    88 3zjl:A (1.5) BS02 CYN ? GO:0019825 ... Q8TLY9 23776624
    89 3zjl:B (1.5) BS02 CYN ? GO:0019825 ... Q8TLY9 23776624
    90 3zjm:A (1.5) BS02 CYN ? GO:0019825 ... Q8TLY9 23776624
    91 3zjm:B (1.5) BS02 CYN ? GO:0019825 ... Q8TLY9 23776624
    92 3zjm:C (1.5) BS02 CYN ? GO:0019825 ... Q8TLY9 23776624
    93 3zjn:B (1.6) BS02 CYN ? GO:0019825 ... Q8TLY9 23776624
    94 4l2m:A (2.25) BS02 CYN ? GO:0005344 ... Q8RT58 23999883
    95 4nl5:A (1.9) BS02 CYN 1.14.99.57 GO:0004392 ... P9WKH3 24901029
    96 4nl5:B (1.9) BS02 CYN 1.14.99.57 GO:0004392 ... P9WKH3 24901029
    97 5azq:A (1.4) BS03 CYN 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 26760442
    98 7atj:A (1.47) BS03 CYN 1.11.1.7 GO:0004601 ... P00433 10574977
    99 7o9l:A (1.85) BS02 CYN ? GO:0004601 ... Q556V8 34200865
    100 7o9l:B (1.85) BS02 CYN ? GO:0004601 ... Q556V8 34200865
    101 7vuw:A (1.6) BS05 CYN 7.1.1.9 GO:0004129 ... P00396 37742916
    102 7vuw:N (1.6) BS05 CYN 7.1.1.9 GO:0004129 ... P00396 37742916
    103 7vvr:A (1.65) BS05 CYN 7.1.1.9 GO:0004129 ... P00396 37742916
    104 7vvr:N (1.65) BS05 CYN 7.1.1.9 GO:0004129 ... P00396 37742916
    105 7w3e:A (1.45) BS05 CYN 7.1.1.9 GO:0004129 ... P00396 37742916
    106 7w3e:N (1.45) BS05 CYN 7.1.1.9 GO:0004129 ... P00396 37742916
    107 8qmk:A (1.3) BS02 CYN 1.8.-.- GO:0003824 ... Q9X0Z6 37962296
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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