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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

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BioLiP
Download all results in tab-seperated text for 809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 6q6b:C (1.9) BS11 CU1 ? GO:0046872 ... Q9X8F4 31111982
    602 6q6b:C (1.9) BS12 CU1 ? GO:0046872 ... Q9X8F4 31111982
    603 6q6b:C (1.9) BS13 CU1 ? GO:0046872 ... Q9X8F4 31111982
    604 6q6b:C (1.9) BS14 CU1 ? GO:0046872 ... Q9X8F4 31111982
    605 6q6b:C (1.9) BS15 CU1 ? GO:0046872 ... Q9X8F4 31111982
    606 6q6b:D (1.9) BS01 CU1 ? GO:0046872 ... Q9X8F4 31111982
    607 6q6b:D (1.9) BS02 CU1 ? GO:0046872 ... Q9X8F4 31111982
    608 6q6b:D (1.9) BS03 CU1 ? GO:0046872 ... Q9X8F4 31111982
    609 6q6b:D (1.9) BS04 CU1 ? GO:0046872 ... Q9X8F4 31111982
    610 6q6b:D (1.9) BS05 CU1 ? GO:0046872 ... Q9X8F4 31111982
    611 6q6b:D (1.9) BS06 CU1 ? GO:0046872 ... Q9X8F4 31111982
    612 6q6b:D (1.9) BS07 CU1 ? GO:0046872 ... Q9X8F4 31111982
    613 6q6b:D (1.9) BS08 CU1 ? GO:0046872 ... Q9X8F4 31111982
    614 6q6b:D (1.9) BS09 CU1 ? GO:0046872 ... Q9X8F4 31111982
    615 6q6b:D (1.9) BS10 CU1 ? GO:0046872 ... Q9X8F4 31111982
    616 6q6b:D (1.9) BS11 CU1 ? GO:0046872 ... Q9X8F4 31111982
    617 6q6b:D (1.9) BS12 CU1 ? GO:0046872 ... Q9X8F4 31111982
    618 6q6b:D (1.9) BS13 CU1 ? GO:0046872 ... Q9X8F4 31111982
    619 6q6b:D (1.9) BS14 CU1 ? GO:0046872 ... Q9X8F4 31111982
    620 6qvh:A (1.28) BS01 CU1 ? GO:0046872 ... Q9X8F4 31111982
    621 6qvh:A (1.28) BS02 CU1 ? GO:0046872 ... Q9X8F4 31111982
    622 6qvh:A (1.28) BS03 CU1 ? GO:0046872 ... Q9X8F4 31111982
    623 6qvh:A (1.28) BS04 CU1 ? GO:0046872 ... Q9X8F4 31111982
    624 6qvh:A (1.28) BS05 CU1 ? GO:0046872 ... Q9X8F4 31111982
    625 6qvh:A (1.28) BS06 CU1 ? GO:0046872 ... Q9X8F4 31111982
    626 6qvh:A (1.28) BS07 CU1 ? GO:0046872 ... Q9X8F4 31111982
    627 6qvh:A (1.28) BS08 CU1 ? GO:0046872 ... Q9X8F4 31111982
    628 6qvh:A (1.28) BS09 CU1 ? GO:0046872 ... Q9X8F4 31111982
    629 6qvh:A (1.28) BS10 CU1 ? GO:0046872 ... Q9X8F4 31111982
    630 6qvh:A (1.28) BS11 CU1 ? GO:0046872 ... Q9X8F4 31111982
    631 6qvh:A (1.28) BS12 CU1 ? GO:0046872 ... Q9X8F4 31111982
    632 6qvh:A (1.28) BS13 CU1 ? GO:0046872 ... Q9X8F4 31111982
    633 6qvh:A (1.28) BS14 CU1 ? GO:0046872 ... Q9X8F4 31111982
    634 6qvh:A (1.28) BS15 CU1 ? GO:0046872 ... Q9X8F4 31111982
    635 6qvh:A (1.28) BS16 CU1 ? GO:0046872 ... Q9X8F4 31111982
    636 6qvh:A (1.28) BS17 CU1 ? GO:0046872 ... Q9X8F4 31111982
    637 6qvh:A (1.28) BS18 CU1 ? GO:0046872 ... Q9X8F4 31111982
    638 6qvh:A (1.28) BS19 CU1 ? GO:0046872 ... Q9X8F4 31111982
    639 6qvh:A (1.28) BS20 CU1 ? GO:0046872 ... Q9X8F4 31111982
    640 6qyb:A (1.18) BS01 CU1 ? N/A Q9X8F4 31111982
    641 6qyb:A (1.18) BS02 CU1 ? N/A Q9X8F4 31111982
    642 6qyb:A (1.18) BS03 CU1 ? N/A Q9X8F4 31111982
    643 6qyb:A (1.18) BS04 CU1 ? N/A Q9X8F4 31111982
    644 6qyb:A (1.18) BS05 CU1 ? N/A Q9X8F4 31111982
    645 6qyb:A (1.18) BS06 CU1 ? N/A Q9X8F4 31111982
    646 6qyb:A (1.18) BS07 CU1 ? N/A Q9X8F4 31111982
    647 6qyb:A (1.18) BS08 CU1 ? N/A Q9X8F4 31111982
    648 6qyb:A (1.18) BS09 CU1 ? N/A Q9X8F4 31111982
    649 6qyb:A (1.18) BS10 CU1 ? N/A Q9X8F4 31111982
    650 6qyb:A (1.18) BS11 CU1 ? N/A Q9X8F4 31111982
    651 6qyb:A (1.18) BS12 CU1 ? N/A Q9X8F4 31111982
    652 6qyb:A (1.18) BS13 CU1 ? N/A Q9X8F4 31111982
    653 6qyb:A (1.18) BS14 CU1 ? N/A Q9X8F4 31111982
    654 6qyb:A (1.18) BS15 CU1 ? N/A Q9X8F4 31111982
    655 6qyb:A (1.18) BS16 CU1 ? N/A Q9X8F4 31111982
    656 6qyb:A (1.18) BS17 CU1 ? N/A Q9X8F4 31111982
    657 6qyb:A (1.18) BS18 CU1 ? N/A Q9X8F4 31111982
    658 6qyb:A (1.18) BS19 CU1 ? N/A Q9X8F4 31111982
    659 6qyb:A (1.18) BS20 CU1 ? N/A Q9X8F4 31111982
    660 6qyb:B (1.18) BS01 CU1 ? N/A Q9X8F4 31111982
    661 6qyb:B (1.18) BS02 CU1 ? N/A Q9X8F4 31111982
    662 6qyb:B (1.18) BS03 CU1 ? N/A Q9X8F4 31111982
    663 6qyb:B (1.18) BS04 CU1 ? N/A Q9X8F4 31111982
    664 6qyb:B (1.18) BS05 CU1 ? N/A Q9X8F4 31111982
    665 6qyb:B (1.18) BS06 CU1 ? N/A Q9X8F4 31111982
    666 6qyb:B (1.18) BS07 CU1 ? N/A Q9X8F4 31111982
    667 6qyb:B (1.18) BS08 CU1 ? N/A Q9X8F4 31111982
    668 6qyb:B (1.18) BS09 CU1 ? N/A Q9X8F4 31111982
    669 6qyb:B (1.18) BS10 CU1 ? N/A Q9X8F4 31111982
    670 6qyb:B (1.18) BS11 CU1 ? N/A Q9X8F4 31111982
    671 6qyb:B (1.18) BS12 CU1 ? N/A Q9X8F4 31111982
    672 6qyb:B (1.18) BS13 CU1 ? N/A Q9X8F4 31111982
    673 6qyb:B (1.18) BS14 CU1 ? N/A Q9X8F4 31111982
    674 6qyb:B (1.18) BS15 CU1 ? N/A Q9X8F4 31111982
    675 6qyb:B (1.18) BS16 CU1 ? N/A Q9X8F4 31111982
    676 6qyb:B (1.18) BS17 CU1 ? N/A Q9X8F4 31111982
    677 6qyb:B (1.18) BS18 CU1 ? N/A Q9X8F4 31111982
    678 6qyb:B (1.18) BS19 CU1 ? N/A Q9X8F4 31111982
    679 6r01:A (1.18) BS01 CU1 ? N/A Q9X8F4 31111982
    680 6r01:A (1.18) BS02 CU1 ? N/A Q9X8F4 31111982
    681 6r01:A (1.18) BS03 CU1 ? N/A Q9X8F4 31111982
    682 6r01:A (1.18) BS04 CU1 ? N/A Q9X8F4 31111982
    683 6r01:A (1.18) BS05 CU1 ? N/A Q9X8F4 31111982
    684 6r01:A (1.18) BS06 CU1 ? N/A Q9X8F4 31111982
    685 6r01:A (1.18) BS07 CU1 ? N/A Q9X8F4 31111982
    686 6r01:A (1.18) BS08 CU1 ? N/A Q9X8F4 31111982
    687 6r01:A (1.18) BS09 CU1 ? N/A Q9X8F4 31111982
    688 6r01:A (1.18) BS10 CU1 ? N/A Q9X8F4 31111982
    689 6r01:A (1.18) BS11 CU1 ? N/A Q9X8F4 31111982
    690 6r01:A (1.18) BS12 CU1 ? N/A Q9X8F4 31111982
    691 6r01:A (1.18) BS13 CU1 ? N/A Q9X8F4 31111982
    692 6r01:A (1.18) BS14 CU1 ? N/A Q9X8F4 31111982
    693 6r01:A (1.18) BS15 CU1 ? N/A Q9X8F4 31111982
    694 6r01:A (1.18) BS16 CU1 ? N/A Q9X8F4 31111982
    695 6r01:A (1.18) BS17 CU1 ? N/A Q9X8F4 31111982
    696 6r01:A (1.18) BS18 CU1 ? N/A Q9X8F4 31111982
    697 6r01:A (1.18) BS19 CU1 ? N/A Q9X8F4 31111982
    698 6rw7:A (1.4) BS02 CU1 ? N/A C5BKQ9 31583018
    699 6s07:A (1.04) BS02 CU1 1.8.3.7 GO:0016491 ... D1A7C3 31588272
    700 6twe:A (-1.00) BS01 CU1 ? N/A Q62YN7 32723819
    701 6xto:A (1.4) BS02 CU1 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    702 6xtp:A (1.8) BS02 CU1 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    703 6xtq:A (1.4) BS02 CU1 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    704 6xtr:A (1.2) BS02 CU1 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    705 6xts:A (1.2) BS02 CU1 1.8.3.7 GO:0016491 ... D1A7C3 N/A
    706 6z8s:A (2.37) BS01 CU1 ? GO:0005515 ... G3XD89 34762655
    707 6z8s:B (2.37) BS01 CU1 ? GO:0005515 ... G3XD89 34762655
    708 6zif:A (2.2) BS01 CU1 N/A N/A N/A N/A
    709 6zif:A (2.2) BS02 CU1 N/A N/A N/A N/A
    710 6zif:A (2.2) BS03 CU1 N/A N/A N/A N/A
    711 6zif:A (2.2) BS04 CU1 N/A N/A N/A N/A
    712 6zif:A (2.2) BS05 CU1 N/A N/A N/A N/A
    713 6zif:A (2.2) BS06 CU1 N/A N/A N/A N/A
    714 6zif:A (2.2) BS07 CU1 N/A N/A N/A N/A
    715 6zif:A (2.2) BS08 CU1 N/A N/A N/A N/A
    716 6zif:A (2.2) BS09 CU1 N/A N/A N/A N/A
    717 6zif:A (2.2) BS10 CU1 N/A N/A N/A N/A
    718 6zif:A (2.2) BS11 CU1 N/A N/A N/A N/A
    719 6zif:A (2.2) BS12 CU1 N/A N/A N/A N/A
    720 6zif:A (2.2) BS13 CU1 N/A N/A N/A N/A
    721 6zif:A (2.2) BS14 CU1 N/A N/A N/A N/A
    722 6zif:A (2.2) BS15 CU1 N/A N/A N/A N/A
    723 6zif:B (2.2) BS02 CU1 N/A N/A N/A N/A
    724 6zif:B (2.2) BS03 CU1 N/A N/A N/A N/A
    725 6zif:B (2.2) BS04 CU1 N/A N/A N/A N/A
    726 6zif:B (2.2) BS05 CU1 N/A N/A N/A N/A
    727 6zif:B (2.2) BS06 CU1 N/A N/A N/A N/A
    728 6zif:B (2.2) BS07 CU1 N/A N/A N/A N/A
    729 6zif:B (2.2) BS08 CU1 N/A N/A N/A N/A
    730 6zif:B (2.2) BS09 CU1 N/A N/A N/A N/A
    731 6zif:B (2.2) BS10 CU1 N/A N/A N/A N/A
    732 6zif:B (2.2) BS11 CU1 N/A N/A N/A N/A
    733 6zif:B (2.2) BS12 CU1 N/A N/A N/A N/A
    734 6zif:B (2.2) BS13 CU1 N/A N/A N/A N/A
    735 6zif:B (2.2) BS14 CU1 N/A N/A N/A N/A
    736 6zif:B (2.2) BS15 CU1 N/A N/A N/A N/A
    737 6zif:C (2.2) BS01 CU1 N/A N/A N/A N/A
    738 6zif:C (2.2) BS02 CU1 N/A N/A N/A N/A
    739 6zif:C (2.2) BS03 CU1 N/A N/A N/A N/A
    740 6zif:C (2.2) BS04 CU1 N/A N/A N/A N/A
    741 6zif:C (2.2) BS05 CU1 N/A N/A N/A N/A
    742 6zif:C (2.2) BS06 CU1 N/A N/A N/A N/A
    743 6zif:C (2.2) BS07 CU1 N/A N/A N/A N/A
    744 6zif:C (2.2) BS08 CU1 N/A N/A N/A N/A
    745 6zif:C (2.2) BS09 CU1 N/A N/A N/A N/A
    746 6zif:C (2.2) BS10 CU1 N/A N/A N/A N/A
    747 6zif:C (2.2) BS11 CU1 N/A N/A N/A N/A
    748 6zif:C (2.2) BS12 CU1 N/A N/A N/A N/A
    749 6zif:C (2.2) BS13 CU1 N/A N/A N/A N/A
    750 6zif:C (2.2) BS14 CU1 N/A N/A N/A N/A
    751 6zif:C (2.2) BS15 CU1 N/A N/A N/A N/A
    752 6zif:D (2.2) BS02 CU1 N/A N/A N/A N/A
    753 6zif:D (2.2) BS03 CU1 N/A N/A N/A N/A
    754 6zif:D (2.2) BS04 CU1 N/A N/A N/A N/A
    755 6zif:D (2.2) BS05 CU1 N/A N/A N/A N/A
    756 6zif:D (2.2) BS06 CU1 N/A N/A N/A N/A
    757 6zif:D (2.2) BS07 CU1 N/A N/A N/A N/A
    758 6zif:D (2.2) BS08 CU1 N/A N/A N/A N/A
    759 6zif:D (2.2) BS09 CU1 N/A N/A N/A N/A
    760 6zif:D (2.2) BS10 CU1 N/A N/A N/A N/A
    761 6zif:D (2.2) BS11 CU1 N/A N/A N/A N/A
    762 6zif:D (2.2) BS12 CU1 N/A N/A N/A N/A
    763 6zif:D (2.2) BS13 CU1 N/A N/A N/A N/A
    764 6zif:D (2.2) BS14 CU1 N/A N/A N/A N/A
    765 6zif:D (2.2) BS15 CU1 N/A N/A N/A N/A
    766 6zif:D (2.2) BS16 CU1 N/A N/A N/A N/A
    767 7ev9:A (2.6) BS01 CU1 1.14.18.3 N/A G1UBD1 34170126
    768 7ev9:A (2.6) BS02 CU1 1.14.18.3 N/A G1UBD1 34170126
    769 7ev9:E (2.6) BS01 CU1 1.14.18.3 N/A G1UBD1 34170126
    770 7ev9:E (2.6) BS02 CU1 1.14.18.3 N/A G1UBD1 34170126
    771 7ev9:I (2.6) BS01 CU1 1.14.18.3 N/A G1UBD1 34170126
    772 7ev9:I (2.6) BS02 CU1 1.14.18.3 N/A G1UBD1 34170126
    773 7kf6:A (3.4) BS01 CU1 ? GO:0005375 ... P38054 33820823
    774 7kf6:B (3.4) BS01 CU1 ? GO:0005375 ... P38054 33820823
    775 7kf6:C (3.4) BS01 CU1 ? GO:0005375 ... P38054 33820823
    776 7kf7:B (2.8) BS01 CU1 ? GO:0005375 ... P38054 33820823
    777 7kf8:B (3.0) BS01 CU1 ? GO:0005375 ... P38054 33820823
    778 7kf8:C (3.0) BS01 CU1 ? GO:0005375 ... P38054 33820823
    779 7l5c:A (2.55) BS01 CU1 ? GO:0005515 ... Q9Y316 38640016
    780 7l5c:B (2.55) BS01 CU1 ? GO:0005515 ... Q9Y316 38640016
    781 7l5c:C (2.55) BS01 CU1 ? GO:0005515 ... Q9Y316 38640016
    782 7mmr:A (2.0) BS01 CU1 1.17.4.1 GO:0004748 ... F2I8X9 N/A
    783 7mmr:B (2.0) BS01 CU1 1.17.4.1 GO:0004748 ... F2I8X9 N/A
    784 7mmr:C (2.0) BS01 CU1 1.17.4.1 GO:0004748 ... F2I8X9 N/A
    785 7mmr:D (2.0) BS01 CU1 1.17.4.1 GO:0004748 ... F2I8X9 N/A
    786 7og7:A (1.85) BS01 CU1 ? N/A Q12M31 34171184
    787 7r4v:A (1.3) BS01 CU1 ? GO:0046872 ... A0A4R2M5S2 35527501
    788 7r4v:B (1.3) BS01 CU1 ? GO:0046872 ... A0A4R2M5S2 35527501
    789 7r4z:A (2.75) BS01 CU1 ? N/A A0A4R2M5S2 35527501
    790 7r4z:B (2.75) BS01 CU1 ? N/A A0A4R2M5S2 35527501
    791 7r5p:A (1.68) BS01 CU1 ? N/A A0A4R2M5S2 35527501
    792 7r5p:B (1.68) BS01 CU1 ? N/A A0A4R2M5S2 35527501
    793 7r5p:C (1.68) BS01 CU1 ? N/A A0A4R2M5S2 35527501
    794 7r5p:D (1.68) BS01 CU1 ? N/A A0A4R2M5S2 35527501
    795 7r5p:E (1.68) BS01 CU1 ? N/A A0A4R2M5S2 35527501
    796 7r5p:F (1.68) BS01 CU1 ? N/A A0A4R2M5S2 35527501
    797 7vw1:A (2.494) BS01 CU1 ? GO:0046872 ... V5J1S8 35066349
    798 7vw1:B (2.494) BS01 CU1 ? GO:0046872 ... V5J1S8 35066349
    799 7vw1:B (2.494) BS02 CU1 ? GO:0046872 ... V5J1S8 35066349
    800 7z3b:A (1.65) BS01 CU1 ? N/A A0A2W1KFF4 38170898
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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