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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 4rkm:D (2.2) BS01 CU1 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    402 4rkm:E (2.2) BS01 CU1 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    403 4rkm:F (2.2) BS01 CU1 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    404 4rkm:G (2.2) BS02 CU1 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    405 4rkm:H (2.2) BS01 CU1 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    406 4rkm:I (2.2) BS03 CU1 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    407 4rkm:J (2.2) BS02 CU1 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    408 4rkm:K (2.2) BS02 CU1 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    409 4rkm:L (2.2) BS02 CU1 1.8.99.- GO:0016002 ... Q7MSJ8 25642962
    410 4tm7:A (1.39) BS01 CU1 3.1.1.31 GO:0005975 ... A0QWX6 29218172
    411 5aa7:A (1.55) BS01 CU1 3.2.1.14 N/A C7R4I0 26763108
    412 5aa7:B (1.55) BS01 CU1 3.2.1.14 N/A C7R4I0 26763108
    413 5arn:A (2.3) BS01 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    414 5arn:A (2.3) BS02 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    415 5arn:A (2.3) BS03 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    416 5arn:A (2.3) BS04 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    417 5arn:A (2.3) BS05 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    418 5arn:A (2.3) BS06 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    419 5arn:A (2.3) BS07 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    420 5arn:A (2.3) BS08 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    421 5arn:A (2.3) BS09 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    422 5arn:A (2.3) BS10 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    423 5arn:A (2.3) BS11 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    424 5arn:A (2.3) BS12 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    425 5arn:A (2.3) BS13 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    426 5arn:A (2.3) BS14 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    427 5arn:A (2.3) BS15 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    428 5arn:A (2.3) BS16 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    429 5arn:A (2.3) BS17 CU1 ? GO:0046872 ... A0A1I9GEP2 N/A
    430 5c92:A (2.1) BS01 CU1 ? GO:0046872 ... E3QHV8 26680532
    431 5fej:A (2.5) BS01 CU1 ? N/A Q6YRW5 27599732
    432 5fej:A (2.5) BS02 CU1 ? N/A Q6YRW5 27599732
    433 5fej:B (2.5) BS01 CU1 ? N/A Q6YRW5 27599732
    434 5fej:B (2.5) BS02 CU1 ? N/A Q6YRW5 27599732
    435 5fej:C (2.5) BS01 CU1 ? N/A Q6YRW5 27599732
    436 5fej:C (2.5) BS02 CU1 ? N/A Q6YRW5 27599732
    437 5fej:D (2.5) BS01 CU1 ? N/A Q6YRW5 27599732
    438 5fej:D (2.5) BS02 CU1 ? N/A Q6YRW5 27599732
    439 5fje:A (1.9) BS01 CU1 ? GO:0046872 ... A0A0M3KL60 26308900
    440 5fje:A (1.9) BS02 CU1 ? GO:0046872 ... A0A0M3KL60 26308900
    441 5fje:A (1.9) BS03 CU1 ? GO:0046872 ... A0A0M3KL60 26308900
    442 5fje:A (1.9) BS04 CU1 ? GO:0046872 ... A0A0M3KL60 26308900
    443 5fje:A (1.9) BS05 CU1 ? GO:0046872 ... A0A0M3KL60 26308900
    444 5fje:A (1.9) BS06 CU1 ? GO:0046872 ... A0A0M3KL60 26308900
    445 5fje:A (1.9) BS07 CU1 ? GO:0046872 ... A0A0M3KL60 26308900
    446 5fje:A (1.9) BS08 CU1 ? GO:0046872 ... A0A0M3KL60 26308900
    447 5fje:A (1.9) BS09 CU1 ? GO:0046872 ... A0A0M3KL60 26308900
    448 5fje:A (1.9) BS10 CU1 ? GO:0046872 ... A0A0M3KL60 26308900
    449 5fje:A (1.9) BS11 CU1 ? GO:0046872 ... A0A0M3KL60 26308900
    450 5fje:A (1.9) BS12 CU1 ? GO:0046872 ... A0A0M3KL60 26308900
    451 5fje:B (1.9) BS01 CU1 ? GO:0046872 ... A0A0M3KL60 26308900
    452 5fje:B (1.9) BS02 CU1 ? GO:0046872 ... A0A0M3KL60 26308900
    453 5fje:B (1.9) BS03 CU1 ? GO:0046872 ... A0A0M3KL60 26308900
    454 5fje:B (1.9) BS04 CU1 ? GO:0046872 ... A0A0M3KL60 26308900
    455 5fje:B (1.9) BS05 CU1 ? GO:0046872 ... A0A0M3KL60 26308900
    456 5fje:B (1.9) BS06 CU1 ? GO:0046872 ... A0A0M3KL60 26308900
    457 5fje:B (1.9) BS07 CU1 ? GO:0046872 ... A0A0M3KL60 26308900
    458 5fje:B (1.9) BS08 CU1 ? GO:0046872 ... A0A0M3KL60 26308900
    459 5fje:B (1.9) BS09 CU1 ? GO:0046872 ... A0A0M3KL60 26308900
    460 5fje:B (1.9) BS10 CU1 ? GO:0046872 ... A0A0M3KL60 26308900
    461 5fje:B (1.9) BS11 CU1 ? GO:0046872 ... A0A0M3KL60 26308900
    462 5fje:B (1.9) BS12 CU1 ? GO:0046872 ... A0A0M3KL60 26308900
    463 5fje:B (1.9) BS13 CU1 ? GO:0046872 ... A0A0M3KL60 26308900
    464 5i0w:A (1.55) BS01 CU1 ? GO:0046872 ... A0A0H3PA01 32780051
    465 5i0w:B (1.55) BS01 CU1 ? GO:0046872 ... A0A0H3PA01 32780051
    466 5kbk:A (1.411) BS01 CU1 1.15.1.1 GO:0005507 ... Q5AD07 27535222
    467 5kbl:A (1.414) BS01 CU1 1.15.1.1 GO:0005507 ... Q5AD07 27535222
    468 5kbm:A (1.416) BS01 CU1 1.15.1.1 GO:0005507 ... Q5AD07 27535222
    469 5msz:A (1.1) BS01 CU1 ? GO:0046872 ... A0A2R2JFH0 29472725
    470 5nqm:A (1.59) BS01 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    471 5nqm:A (1.59) BS02 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    472 5nqm:A (1.59) BS03 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    473 5nqm:A (1.59) BS04 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    474 5nqn:A (1.62) BS01 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    475 5nqn:A (1.62) BS02 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    476 5nqn:A (1.62) BS03 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    477 5nqn:A (1.62) BS04 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    478 5nqn:A (1.62) BS05 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    479 5nqn:A (1.62) BS06 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    480 5nqn:A (1.62) BS07 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    481 5nqn:A (1.62) BS08 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    482 5nqn:A (1.62) BS09 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    483 5nqn:A (1.62) BS10 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    484 5nqn:A (1.62) BS11 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    485 5nqn:A (1.62) BS12 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    486 5nqn:A (1.62) BS13 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    487 5nqn:A (1.62) BS14 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    488 5nqn:A (1.62) BS15 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    489 5nqo:A (1.15) BS01 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    490 5nqo:A (1.15) BS02 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    491 5nqo:A (1.15) BS03 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    492 5nqo:A (1.15) BS04 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    493 5nqo:A (1.15) BS05 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    494 5nqo:A (1.15) BS06 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    495 5nqo:A (1.15) BS07 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    496 5nqo:A (1.15) BS08 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    497 5nqo:A (1.15) BS09 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    498 5nqo:A (1.15) BS10 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    499 5nqo:A (1.15) BS11 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    500 5nqo:A (1.15) BS12 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    501 5nqo:A (1.15) BS13 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    502 5nqo:A (1.15) BS14 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    503 5nqo:A (1.15) BS15 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    504 5nqo:A (1.15) BS16 CU1 ? GO:0046872 ... A0A1I9GEP2 28504850
    505 5ssx:A (1.02) BS01 CU1 1.8.3.7 N/A Q8NBK3 N/A
    506 5ssy:A (1.29) BS01 CU1 1.8.3.7 N/A Q8NBK3 N/A
    507 5ssz:A (1.02) BS01 CU1 1.8.3.7 N/A Q8NBK3 N/A
    508 5vde:B (1.65) BS01 CU1 ? GO:0005737 ... P38636 28865724
    509 5vde:D (1.65) BS01 CU1 ? GO:0005737 ... P38636 28865724
    510 5vdf:A (1.93) BS01 CU1 ? GO:0005737 ... P38636 28865724
    511 5vdf:C (1.93) BS01 CU1 ? GO:0005737 ... P38636 28865724
    512 5vdf:E (1.93) BS01 CU1 ? GO:0005737 ... P38636 28865724
    513 5vdf:G (1.93) BS01 CU1 ? GO:0005737 ... P38636 28865724
    514 5vdf:H (1.93) BS01 CU1 ? GO:0005737 ... P38636 28865724
    515 5weh:A (3.45) BS03 CU1 7.1.1.9 GO:0004129 ... P33517 28842531
    516 5weh:B (3.45) BS01 CU1 7.1.1.9 GO:0004129 ... Q03736 28842531
    517 5weh:B (3.45) BS02 CU1 7.1.1.9 GO:0004129 ... Q03736 28842531
    518 5weh:G (3.45) BS03 CU1 7.1.1.9 GO:0004129 ... P33517 28842531
    519 5weh:H (3.45) BS01 CU1 7.1.1.9 GO:0004129 ... Q03736 28842531
    520 5weh:H (3.45) BS02 CU1 7.1.1.9 GO:0004129 ... Q03736 28842531
    521 5yjs:A (2.16) BS02 CU1 ? GO:0046872 ... A0A452CSM5 30181145
    522 5yjs:B (2.16) BS02 CU1 ? GO:0046872 ... A0A452CSM5 30181145
    523 6cpd:A (1.903) BS01 CU1 ? GO:0046872 ... A0A452CSS7 30323281
    524 6cpd:B (1.903) BS01 CU1 ? GO:0046872 ... A0A452CSS7 30323281
    525 6ek9:A (1.5) BS01 CU1 ? N/A D6ES11 29292456
    526 6ek9:A (1.5) BS02 CU1 ? N/A D6ES11 29292456
    527 6ek9:A (1.5) BS03 CU1 ? N/A D6ES11 29292456
    528 6ek9:A (1.5) BS04 CU1 ? N/A D6ES11 29292456
    529 6ek9:A (1.5) BS05 CU1 ? N/A D6ES11 29292456
    530 6ek9:A (1.5) BS06 CU1 ? N/A D6ES11 29292456
    531 6ek9:A (1.5) BS07 CU1 ? N/A D6ES11 29292456
    532 6ek9:A (1.5) BS08 CU1 ? N/A D6ES11 29292456
    533 6ek9:A (1.5) BS09 CU1 ? N/A D6ES11 29292456
    534 6ek9:A (1.5) BS10 CU1 ? N/A D6ES11 29292456
    535 6ek9:A (1.5) BS11 CU1 ? N/A D6ES11 29292456
    536 6ek9:A (1.5) BS12 CU1 ? N/A D6ES11 29292456
    537 6ek9:A (1.5) BS13 CU1 ? N/A D6ES11 29292456
    538 6ek9:A (1.5) BS14 CU1 ? N/A D6ES11 29292456
    539 6ek9:A (1.5) BS15 CU1 ? N/A D6ES11 29292456
    540 6ek9:A (1.5) BS16 CU1 ? N/A D6ES11 29292456
    541 6ek9:A (1.5) BS17 CU1 ? N/A D6ES11 29292456
    542 6ek9:A (1.5) BS18 CU1 ? N/A D6ES11 29292456
    543 6ek9:A (1.5) BS19 CU1 ? N/A D6ES11 29292456
    544 6ek9:A (1.5) BS20 CU1 ? N/A D6ES11 29292456
    545 6ff2:A (1.3) BS01 CU1 ? GO:0005507 ... Q2FV63 N/A
    546 6ff2:A (1.3) BS02 CU1 ? GO:0005507 ... Q2FV63 N/A
    547 6ff2:B (1.3) BS01 CU1 ? GO:0005507 ... Q2FV63 N/A
    548 6ff2:B (1.3) BS02 CU1 ? GO:0005507 ... Q2FV63 N/A
    549 6l9s:A (2.0) BS01 CU1 ? GO:0005507 ... A7NNM5 31933173
    550 6mf0:A (3.2) BS03 CU1 ? GO:0005507 ... P00451
    P12263    		 31454152
    551 6mf0:B (3.2) BS03 CU1 ? GO:0005507 ... P00451
    P12263    		 31454152
    552 6mf2:A (3.60936) BS03 CU1 ? GO:0005507 ... P00451 31454152
    553 6n5u:A (2.66) BS01 CU1 ? N/A Q8VYP0 31348612
    554 6n5u:B (2.66) BS01 CU1 ? N/A Q8VYP0 31348612
    555 6n5u:C (2.66) BS01 CU1 ? N/A Q8VYP0 31348612
    556 6q58:A (1.5) BS01 CU1 ? N/A Q9X8F4 31111982
    557 6q58:A (1.5) BS02 CU1 ? N/A Q9X8F4 31111982
    558 6q58:A (1.5) BS03 CU1 ? N/A Q9X8F4 31111982
    559 6q58:A (1.5) BS04 CU1 ? N/A Q9X8F4 31111982
    560 6q58:B (1.5) BS01 CU1 ? N/A Q9X8F4 31111982
    561 6q58:B (1.5) BS02 CU1 ? N/A Q9X8F4 31111982
    562 6q58:B (1.5) BS03 CU1 ? N/A Q9X8F4 31111982
    563 6q58:B (1.5) BS04 CU1 ? N/A Q9X8F4 31111982
    564 6q58:C (1.5) BS01 CU1 ? N/A Q9X8F4 31111982
    565 6q58:C (1.5) BS02 CU1 ? N/A Q9X8F4 31111982
    566 6q58:C (1.5) BS03 CU1 ? N/A Q9X8F4 31111982
    567 6q58:D (1.5) BS01 CU1 ? N/A Q9X8F4 31111982
    568 6q58:D (1.5) BS02 CU1 ? N/A Q9X8F4 31111982
    569 6q58:D (1.5) BS03 CU1 ? N/A Q9X8F4 31111982
    570 6q58:D (1.5) BS04 CU1 ? N/A Q9X8F4 31111982
    571 6q6b:A (1.9) BS01 CU1 ? GO:0046872 ... Q9X8F4 31111982
    572 6q6b:A (1.9) BS02 CU1 ? GO:0046872 ... Q9X8F4 31111982
    573 6q6b:A (1.9) BS03 CU1 ? GO:0046872 ... Q9X8F4 31111982
    574 6q6b:A (1.9) BS04 CU1 ? GO:0046872 ... Q9X8F4 31111982
    575 6q6b:A (1.9) BS05 CU1 ? GO:0046872 ... Q9X8F4 31111982
    576 6q6b:A (1.9) BS06 CU1 ? GO:0046872 ... Q9X8F4 31111982
    577 6q6b:A (1.9) BS07 CU1 ? GO:0046872 ... Q9X8F4 31111982
    578 6q6b:A (1.9) BS08 CU1 ? GO:0046872 ... Q9X8F4 31111982
    579 6q6b:A (1.9) BS09 CU1 ? GO:0046872 ... Q9X8F4 31111982
    580 6q6b:A (1.9) BS10 CU1 ? GO:0046872 ... Q9X8F4 31111982
    581 6q6b:A (1.9) BS11 CU1 ? GO:0046872 ... Q9X8F4 31111982
    582 6q6b:B (1.9) BS01 CU1 ? GO:0046872 ... Q9X8F4 31111982
    583 6q6b:B (1.9) BS02 CU1 ? GO:0046872 ... Q9X8F4 31111982
    584 6q6b:B (1.9) BS03 CU1 ? GO:0046872 ... Q9X8F4 31111982
    585 6q6b:B (1.9) BS04 CU1 ? GO:0046872 ... Q9X8F4 31111982
    586 6q6b:B (1.9) BS05 CU1 ? GO:0046872 ... Q9X8F4 31111982
    587 6q6b:B (1.9) BS06 CU1 ? GO:0046872 ... Q9X8F4 31111982
    588 6q6b:B (1.9) BS07 CU1 ? GO:0046872 ... Q9X8F4 31111982
    589 6q6b:B (1.9) BS08 CU1 ? GO:0046872 ... Q9X8F4 31111982
    590 6q6b:B (1.9) BS09 CU1 ? GO:0046872 ... Q9X8F4 31111982
    591 6q6b:C (1.9) BS01 CU1 ? GO:0046872 ... Q9X8F4 31111982
    592 6q6b:C (1.9) BS02 CU1 ? GO:0046872 ... Q9X8F4 31111982
    593 6q6b:C (1.9) BS03 CU1 ? GO:0046872 ... Q9X8F4 31111982
    594 6q6b:C (1.9) BS04 CU1 ? GO:0046872 ... Q9X8F4 31111982
    595 6q6b:C (1.9) BS05 CU1 ? GO:0046872 ... Q9X8F4 31111982
    596 6q6b:C (1.9) BS06 CU1 ? GO:0046872 ... Q9X8F4 31111982
    597 6q6b:C (1.9) BS07 CU1 ? GO:0046872 ... Q9X8F4 31111982
    598 6q6b:C (1.9) BS08 CU1 ? GO:0046872 ... Q9X8F4 31111982
    599 6q6b:C (1.9) BS09 CU1 ? GO:0046872 ... Q9X8F4 31111982
    600 6q6b:C (1.9) BS10 CU1 ? GO:0046872 ... Q9X8F4 31111982
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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